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Mutant Information

Mutant Name	FN-83 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-83 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	367998	G-A	HET	INTRON
SBS	Chr1	32952566	T-A	HET	INTERGENIC
SBS	Chr1	33469984	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g57880
SBS	Chr1	35007312	C-A	HET	INTERGENIC
SBS	Chr2	8089368	G-A	HET	INTERGENIC
SBS	Chr3	8881657	T-C	HET	INTERGENIC
SBS	Chr3	20053998	C-T	HOMO	INTRON
SBS	Chr3	36204771	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g64070
SBS	Chr4	10696376	C-T	HOMO	INTERGENIC
SBS	Chr4	12986524	A-C	HOMO	INTERGENIC
SBS	Chr4	21472994	A-G	HOMO	UTR_3_PRIME
SBS	Chr4	32818854	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g55200
SBS	Chr5	28121022	A-G	HET	INTERGENIC
SBS	Chr6	13041910	A-T	HOMO	UTR_5_PRIME
SBS	Chr6	15106760	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25850
SBS	Chr6	15644509	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr6	19919348	C-T	HET	INTERGENIC
SBS	Chr7	2593198	C-T	HOMO	INTERGENIC
SBS	Chr7	6530822	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g11800
SBS	Chr7	6530824	G-T	HOMO	STOP_GAINED	LOC_Os07g11800
SBS	Chr7	7668133	A-T	HOMO	INTERGENIC
SBS	Chr7	18700058	T-C	HET	INTERGENIC
SBS	Chr8	13155374	G-A	HOMO	INTRON
SBS	Chr8	16005574	G-A	HET	INTERGENIC
SBS	Chr11	824637	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g02610
SBS	Chr12	25337180	A-C	HET	INTERGENIC
SBS	Chr12	25553369	G-A	HET	INTERGENIC

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	911946	911955	9
Deletion	Chr6	1390288	1390320	32	LOC_Os06g03600
Deletion	Chr7	2473243	2473246	3
Deletion	Chr9	4195001	4305000	110000	17
Deletion	Chr5	6376085	6376093	8
Deletion	Chr2	7516118	7516119	1	LOC_Os02g13870
Deletion	Chr1	7591909	7591947	38	LOC_Os01g13570
Deletion	Chr4	14243798	14243838	40	LOC_Os04g24800
Deletion	Chr7	14665018	14665021	3
Deletion	Chr5	15747405	15747412	7
Deletion	Chr7	24771162	24771270	108
Deletion	Chr4	26542278	26542297	19
Deletion	Chr1	30843372	30843373	1

No Insertion

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	12420879	13377673	LOC_Os06g22919
Inversion	Chr10	14200546	14506072	LOC_Os10g28000
Inversion	Chr10	14695299	14734450	LOC_Os10g28320
Inversion	Chr9	18504120	19484762
Inversion	Chr2	22084209	23468457	LOC_Os02g36570

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	14734463	Chr9	4195665	2
Translocation	Chr9	18504122	Chr3	4837518	LOC_Os03g09260
Translocation	Chr9	19484759	Chr3	4842285	LOC_Os03g09270

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