Search Results

Mutant Information

Mutant Name	FN-9 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-9 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Low (Between 25% and 74%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 14

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31007570	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g53920
SBS	Chr1	31239370	T-A	Homo	INTERGENIC
SBS	Chr2	27394609	C-T	Homo	INTERGENIC
SBS	Chr2	28264979	G-A	Homo	INTERGENIC
SBS	Chr4	1819311	C-A	Homo	INTERGENIC
SBS	Chr5	5396235	G-T	Homo	STOP_GAINED	LOC_Os05g09550
SBS	Chr5	11400344	T-A	Homo	INTERGENIC
SBS	Chr6	28291266	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os06g46600
SBS	Chr7	4393694	T-A	Homo	INTERGENIC
SBS	Chr7	4587606	T-A	Homo	INTRON
SBS	Chr7	4587607	G-T	Homo	INTRON
SBS	Chr7	28005621	G-T	Homo	INTRON
SBS	Chr11	11179822	G-A	Homo	INTERGENIC
SBS	Chr12	13782817	A-G	Homo	INTERGENIC

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	452461	452464	3
Deletion	Chr6	685375	685385	10
Deletion	Chr7	904809	904810	1
Deletion	Chr1	2880650	2880653	3
Deletion	Chr2	3794616	3794633	17
Deletion	Chr7	4393919	4393920	1
Deletion	Chr10	5161660	5161679	19
Deletion	Chr3	6553974	6553978	4
Deletion	Chr7	7462940	7462941	1	LOC_Os07g13010
Deletion	Chr4	7642001	7914000	272000	43
Deletion	Chr4	7923001	8024000	101000	14
Deletion	Chr3	9404223	9404224	1	LOC_Os03g16910
Deletion	Chr8	9463875	9463880	5
Deletion	Chr11	11703977	11703984	7
Deletion	Chr10	12207828	12207830	2
Deletion	Chr9	12732613	12744786	12173	LOC_Os09g21110
Deletion	Chr1	13672155	13672161	6	LOC_Os01g24270
Deletion	Chr11	14274757	14274767	10
Deletion	Chr12	15914141	15914142	1
Deletion	Chr10	17893387	17893397	10
Deletion	Chr10	17970244	17970265	21
Deletion	Chr5	18185367	18185370	3
Deletion	Chr12	18566330	18566331	1
Deletion	Chr12	18733260	18733265	5
Deletion	Chr8	20461006	20461018	12	LOC_Os08g32970
Deletion	Chr7	21212852	21212858	6
Deletion	Chr3	21747266	21747267	1
Deletion	Chr7	21876238	21876244	6
Deletion	Chr1	22325432	22325443	11	LOC_Os01g39580
Deletion	Chr3	23293524	23293532	8
Deletion	Chr4	24257249	24257277	28	LOC_Os04g40870
Deletion	Chr3	25022580	25022604	24	LOC_Os03g44460
Deletion	Chr11	25544395	25544399	4
Deletion	Chr1	28711022	28711023	1
Deletion	Chr3	34265420	34265432	12	LOC_Os03g60240

Insertions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr8	16378913	16378932	20
Insertion	Chr9	10751724	10751732	9	LOC_Os09g17580
Insertion	Chr1	42943249	42943252	4
Insertion	Chr11	6203339	6203342	4
Insertion	Chr4	32576775	32576777	3
Insertion	Chr6	23290722	23290724	3
Insertion	Chr11	28824595	28824596	2
Insertion	Chr4	17278911	17278911	1
Insertion	Chr5	20911977	20911977	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	10597805	13128389	LOC_Os04g19090

No Translocation

Main menu