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Mutant Information

Mutant Name	FN-95 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-95 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24698092	T-G	HET	INTERGENIC
SBS	Chr1	29336899	G-T	HET	INTERGENIC
SBS	Chr10	11105395	C-T	HET	INTERGENIC
SBS	Chr10	1620832	C-T	HOMO	INTERGENIC
SBS	Chr11	14710659	A-G	HET	INTRON
SBS	Chr11	15206691	T-C	HOMO	INTERGENIC
SBS	Chr11	28840686	T-A	HOMO	INTRON
SBS	Chr12	3708475	C-A	HET	INTERGENIC
SBS	Chr12	5370618	T-A	HOMO	INTERGENIC
SBS	Chr2	1146742	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g02930
SBS	Chr2	1146743	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g02930
SBS	Chr2	1594096	A-T	HOMO	INTERGENIC
SBS	Chr2	17607508	G-A	HET	INTERGENIC
SBS	Chr2	24080306	C-T	HET	INTERGENIC
SBS	Chr3	29795939	C-A	HOMO	INTRON
SBS	Chr3	29795940	T-A	HOMO	INTRON
SBS	Chr3	34396916	T-C	HOMO	INTERGENIC
SBS	Chr4	11929723	T-A	HOMO	INTERGENIC
SBS	Chr4	21085313	T-A	HOMO	INTERGENIC
SBS	Chr4	28227828	A-T	HET	INTRON
SBS	Chr4	29494664	T-G	HET	INTRON
SBS	Chr4	9457831	T-C	HOMO	INTERGENIC
SBS	Chr5	16438237	C-T	HET	INTERGENIC
SBS	Chr5	18959948	A-G	HET	INTRON
SBS	Chr6	13405425	G-A	HOMO	INTERGENIC
SBS	Chr7	14919590	A-G	HET	INTRON
SBS	Chr7	17329279	T-C	HOMO	INTERGENIC
SBS	Chr7	9947749	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g16910
SBS	Chr8	10019628	T-A	HOMO	INTERGENIC
SBS	Chr8	15350266	G-T	HET	INTERGENIC
SBS	Chr9	17771113	C-T	HET	STOP_GAINED	LOC_Os09g29239

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1971421	1971422	1
Deletion	Chr9	2393001	2488000	95000	16
Deletion	Chr5	5710045	5710048	3
Deletion	Chr3	7100740	7100752	12
Deletion	Chr12	11092824	11092825	1
Deletion	Chr1	12355812	12355854	42
Deletion	Chr6	14387413	14387438	25	LOC_Os06g24540
Deletion	Chr8	15670517	15670524	7
Deletion	Chr10	15930604	15930640	36
Deletion	Chr7	16534598	16534608	10	LOC_Os07g28310
Deletion	Chr5	16807336	16807337	1
Deletion	Chr7	17237143	17237342	199
Deletion	Chr10	20248808	20311106	62298	8
Deletion	Chr1	23205388	24016066	810678	128
Deletion	Chr2	25219647	25219664	17
Deletion	Chr4	28223159	28223168	9
Deletion	Chr3	28874021	28874039	18
Deletion	Chr3	29709718	29709726	8
Deletion	Chr1	32999641	32999643	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	14786725	14786725	1	LOC_Os12g25550
Insertion	Chr3	7054743	7054743	1
Insertion	Chr3	9887960	9887960	1
Insertion	Chr7	5284335	5284337	3
Insertion	Chr8	26530008	26530008	1
Insertion	Chr9	19905483	19905488	6

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	2059272	2392383	LOC_Os09g04010
Inversion	Chr3	27419450	28103138

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2522404	Chr6	26766885	LOC_Os06g44330
Translocation	Chr12	9966059	Chr7	17237343	LOC_Os07g29360

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