Search Nipponbare

Mutant Information

Mutant Name	FN-96 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-96 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	35144611	G-A	HET	INTERGENIC
SBS	Chr1	6213131	A-G	HOMO	INTERGENIC
SBS	Chr10	5451874	T-C	HET	INTERGENIC
SBS	Chr11	19969036	C-T	HOMO	INTERGENIC
SBS	Chr12	11979149	A-G	HET	INTERGENIC
SBS	Chr2	15184745	A-G	HET	INTERGENIC
SBS	Chr3	16416756	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g28950
SBS	Chr3	20660075	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g37270
SBS	Chr3	31553527	A-T	HOMO	INTERGENIC
SBS	Chr4	21042815	A-T	HOMO	INTRON
SBS	Chr4	23624265	G-T	HOMO	INTERGENIC
SBS	Chr4	35488043	T-A	HET	INTERGENIC
SBS	Chr5	16565348	G-A	HET	INTERGENIC
SBS	Chr6	9694307	C-T	HOMO	INTERGENIC
SBS	Chr8	12840554	T-C	HOMO	INTRON
SBS	Chr9	2347576	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g04420

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1494448	1494453	5
Deletion	Chr4	4752047	4752050	3	LOC_Os04g08749
Deletion	Chr10	5462881	5462885	4
Deletion	Chr4	6269577	6269580	3
Deletion	Chr4	6313921	6313922	1
Deletion	Chr8	11050023	11050034	11
Deletion	Chr3	12726740	12726742	2
Deletion	Chr6	18073980	18073985	5
Deletion	Chr10	19998103	19998109	6
Deletion	Chr10	20175945	20175952	7	LOC_Os10g37710
Deletion	Chr10	21144681	21144682	1
Deletion	Chr11	21503244	21503246	2	LOC_Os11g36470
Deletion	Chr7	25969813	25969828	15
Deletion	Chr1	28815984	28815985	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	18363817	18363818	2
Insertion	Chr4	34730832	34730835	4

No Inversion

No Translocation