Search Nipponbare

Mutant Information

Mutant Name	FN-97 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-97 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19592100	G-A	HET	INTERGENIC
SBS	Chr1	21428496	C-G	HET	INTRON
SBS	Chr1	27621716	C-T	HET	INTERGENIC
SBS	Chr1	3446843	G-A	HOMO	INTERGENIC
SBS	Chr10	85615	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g01090
SBS	Chr11	7527030	T-G	HET	INTRON
SBS	Chr12	26122824	T-G	HOMO	UTR_3_PRIME
SBS	Chr2	12654796	C-T	HOMO	INTERGENIC
SBS	Chr2	3112958	G-T	HOMO	INTERGENIC
SBS	Chr2	33713415	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g55030
SBS	Chr3	13271316	A-T	HET	INTRON
SBS	Chr3	13271317	C-T	HET	INTRON
SBS	Chr3	19489442	A-T	HOMO	INTRON
SBS	Chr3	19489443	A-T	HOMO	INTRON
SBS	Chr4	10971921	A-G	HOMO	INTERGENIC
SBS	Chr4	17297947	C-A	HET	INTRON
SBS	Chr5	15305393	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	17931218	T-C	HET	INTERGENIC
SBS	Chr6	21218441	G-A	HET	INTERGENIC
SBS	Chr6	28304037	G-A	HET	INTERGENIC
SBS	Chr6	9838983	T-A	HET	INTERGENIC
SBS	Chr8	12903501	G-T	HET	INTERGENIC
SBS	Chr8	21369790	C-G	HET	INTRON
SBS	Chr8	9676632	C-A	HET	INTRON
SBS	Chr9	11568153	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g19340
SBS	Chr9	8422283	T-C	HET	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	2338061	2338062	1
Deletion	Chr5	8260594	8260600	6
Deletion	Chr9	10284981	10284993	12
Deletion	Chr3	10566755	10566759	4	LOC_Os03g18860
Deletion	Chr9	12293407	12293410	3
Deletion	Chr1	12334852	12334857	5
Deletion	Chr3	12537111	12537143	32
Deletion	Chr2	13358599	13358604	5
Deletion	Chr3	20258685	20258687	2	LOC_Os03g36550
Deletion	Chr5	26676986	26676988	2
Deletion	Chr1	32366038	32366039	1
Deletion	Chr1	33363356	33363357	1
Deletion	Chr1	33785714	33785715	1	LOC_Os01g58444
Deletion	Chr3	34275519	34275521	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	21918122	21918122	1
Insertion	Chr7	23008932	23008942	11

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	20260988	20268923	LOC_Os03g36560

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	786571	Chr6	26573172
Translocation	Chr7	786586	Chr6	26571691	LOC_Os06g44050

Main menu