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Mutant Information

Mutant Name	FN-98 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN-98 Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	807702	G-A	HET	INTERGENIC
SBS	Chr2	4668547	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g09100
SBS	Chr2	8613306	T-C	HOMO	INTERGENIC
SBS	Chr2	26247798	C-A	HOMO	INTRON
SBS	Chr3	27304695	T-A	HET	INTERGENIC
SBS	Chr3	31439432	T-G	HOMO	INTERGENIC
SBS	Chr4	14619311	C-A	HET	INTERGENIC
SBS	Chr4	22585664	G-A	HOMO	INTRON
SBS	Chr4	23633406	G-A	HOMO	INTRON
SBS	Chr4	26224387	C-T	HOMO	INTRON
SBS	Chr4	33608480	G-T	HET	INTERGENIC
SBS	Chr5	4092374	C-A	HOMO	INTERGENIC
SBS	Chr5	4092375	A-G	HOMO	INTERGENIC
SBS	Chr6	2617627	C-T	HOMO	INTRON
SBS	Chr6	13425171	C-T	HET	INTERGENIC
SBS	Chr7	6471877	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g11700
SBS	Chr7	14148098	A-C	HET	INTERGENIC
SBS	Chr9	14873798	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	9070370	C-T	HET	INTERGENIC
SBS	Chr11	13996373	T-C	HET	INTERGENIC
SBS	Chr11	13996374	C-A	HET	INTERGENIC
SBS	Chr12	1898014	C-T	HOMO	INTRON
SBS	Chr12	19876000	A-C	HET	INTERGENIC

Deletions: 9

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1814831	1814832	1
Deletion	Chr5	4547539	4547549	10
Deletion	Chr8	5786266	5786267	1
Deletion	Chr2	9639815	9639816	1
Deletion	Chr9	11268961	11268962	1
Deletion	Chr2	17623759	17623780	21	LOC_Os02g29630
Deletion	Chr2	22364001	22409000	45000	5
Deletion	Chr5	27780790	27780811	21
Deletion	Chr5	28337106	28337108	2

No Insertion

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	8607063	8691680
Inversion	Chr2	32030835	33269057	LOC_Os02g52330
Inversion	Chr2	32030846	33269060	LOC_Os02g52330

No Translocation

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