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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	1080963	C-T	HOMO	INTERGENIC
SBS	Chr11	17174594	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g29610
SBS	Chr11	25032988	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g41690
SBS	Chr11	8755327	T-A	HET	SYNONYMOUS_CODING
SBS	Chr12	21210817	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g34850
SBS	Chr12	23446097	T-C	HET	SYNONYMOUS_CODING
SBS	Chr12	23659558	C-G	HET	INTERGENIC
SBS	Chr12	426311	G-A	HOMO	INTERGENIC
SBS	Chr12	7238252	T-C	HOMO	INTERGENIC
SBS	Chr2	11039441	A-G	HET	INTERGENIC
SBS	Chr2	22765382	A-G	HOMO	INTERGENIC
SBS	Chr2	29689879	C-A	HET	INTERGENIC
SBS	Chr2	9288731	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g16330
SBS	Chr3	17271090	T-C	HOMO	INTERGENIC
SBS	Chr3	20825427	C-T	HET	INTERGENIC
SBS	Chr3	28883911	G-A	HOMO	INTERGENIC
SBS	Chr3	34529598	C-T	HET	UTR_5_PRIME
SBS	Chr3	35276356	T-A	HET	INTERGENIC
SBS	Chr4	25833927	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g43660
SBS	Chr5	24811987	G-A	HOMO	INTERGENIC
SBS	Chr5	26064374	C-A	HET	INTERGENIC
SBS	Chr5	27219533	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	2962415	G-A	HET	STOP_GAINED	LOC_Os05g05890
SBS	Chr5	7147194	T-A	HET	INTERGENIC
SBS	Chr6	11024271	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g19370
SBS	Chr6	11024272	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g19370
SBS	Chr6	14476602	A-G	HOMO	INTERGENIC
SBS	Chr6	5957860	G-T	HET	INTRON
SBS	Chr7	17882978	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30250
SBS	Chr7	9426261	C-T	HET	INTRON
SBS	Chr8	1303218	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g02990
SBS	Chr8	13163526	T-A	HET	INTERGENIC
SBS	Chr8	13163527	C-T	HET	INTERGENIC
SBS	Chr8	23816216	A-G	HET	INTERGENIC
SBS	Chr9	16342011	A-G	HET	INTERGENIC
SBS	Chr9	4680415	G-T	HET	INTERGENIC

Deletions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	3148001	3364000	216000	38
Deletion	Chr5	3248952	3248953	1
Deletion	Chr7	4552171	4552177	6	LOC_Os07g08810
Deletion	Chr4	4868419	4868424	5
Deletion	Chr12	17049047	17049048	1
Deletion	Chr6	20595497	20595513	16
Deletion	Chr8	22530154	22530155	1	LOC_Os08g35710
Deletion	Chr7	24712722	24712732	10
Deletion	Chr1	25241001	25604000	363000	51
Deletion	Chr8	25275027	25275032	5	LOC_Os08g39890
Deletion	Chr3	25970762	25970771	9
Deletion	Chr5	27548904	27548905	1
Deletion	Chr6	29614001	29670000	56000	5
Deletion	Chr1	33188751	33188754	3	LOC_Os01g57420
Deletion	Chr2	35214007	35214011	4

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	13147168	13147168	1
Insertion	Chr1	6160503	6160506	4
Insertion	Chr11	871553	871554	2
Insertion	Chr4	17718889	17718892	4
Insertion	Chr6	10493040	10493041	2
Insertion	Chr8	5533020	5533021	2
Insertion	Chr9	16637694	16637694	1
Insertion	Chr9	9132111	9132117	7

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	59833	352091	2
Inversion	Chr1	25603645	26085728	LOC_Os01g45120
Inversion	Chr1	25824230	26085247

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1340602	Chr1	26085247
Translocation	Chr8	1340605	Chr1	26085250
Translocation	Chr10	3159374	Chr3	8152502	LOC_Os10g06170
Translocation	Chr12	15947415	Chr4	23954007
Translocation	Chr11	15952945	Chr7	11854549

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