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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	581000	T-A	HET	INTERGENIC
SBS	Chr1	5384481	G-C	HET	SYNONYMOUS_CODING
SBS	Chr1	16300647	T-C	HOMO	INTERGENIC
SBS	Chr1	17538979	T-C	HOMO	INTERGENIC
SBS	Chr1	18144472	C-G	HOMO	INTERGENIC
SBS	Chr1	18369455	A-G	HOMO	INTERGENIC
SBS	Chr2	7352560	G-A	HOMO	INTERGENIC
SBS	Chr2	16653387	G-A	HET	INTRON
SBS	Chr3	1838424	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g04030
SBS	Chr3	3327118	C-A	HOMO	INTERGENIC
SBS	Chr3	14892586	A-T	HOMO	INTERGENIC
SBS	Chr3	20786702	C-T	HOMO	INTERGENIC
SBS	Chr3	23030206	T-A	HET	INTERGENIC
SBS	Chr3	36091007	C-T	HET	INTRON
SBS	Chr4	30540439	T-A	HOMO	INTERGENIC
SBS	Chr5	7501555	C-T	HET	INTERGENIC
SBS	Chr5	10063255	C-G	HET	INTERGENIC
SBS	Chr5	11407881	C-T	HET	INTERGENIC
SBS	Chr5	25744401	G-A	HET	SYNONYMOUS_CODING
SBS	Chr6	20211010	G-A	HOMO	INTERGENIC
SBS	Chr6	25778143	G-A	HET	INTERGENIC
SBS	Chr6	28903701	G-A	HET	INTERGENIC
SBS	Chr7	11138938	A-G	HET	INTERGENIC
SBS	Chr7	18745419	G-T	HET	INTERGENIC
SBS	Chr7	19173644	C-T	HET	INTERGENIC
SBS	Chr8	8612390	T-A	HET	INTERGENIC
SBS	Chr8	15185447	C-T	HOMO	INTERGENIC
SBS	Chr10	3166337	G-A	HET	SYNONYMOUS_CODING
SBS	Chr10	11743618	A-T	HET	INTERGENIC
SBS	Chr10	15038327	A-G	HOMO	INTERGENIC
SBS	Chr10	16561166	C-T	HET	INTERGENIC
SBS	Chr10	17033949	A-G	HOMO	UTR_3_PRIME
SBS	Chr11	8344715	G-A	HOMO	INTERGENIC
SBS	Chr11	17856271	C-T	HOMO	INTERGENIC
SBS	Chr11	20908358	C-A	HOMO	INTERGENIC
SBS	Chr12	25801249	C-T	HET	SYNONYMOUS_CODING

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1203597	1203935	338
Deletion	Chr8	1203764	1203765	1
Deletion	Chr10	2165624	2165626	2
Deletion	Chr2	3264962	3264965	3	LOC_Os02g06530
Deletion	Chr7	3623670	3623678	8
Deletion	Chr5	3644599	3644679	80
Deletion	Chr1	4095879	4095887	8	LOC_Os01g08350
Deletion	Chr1	6776486	6776487	1	LOC_Os01g12400
Deletion	Chr2	6795209	6795213	4
Deletion	Chr11	7580726	7580743	17	LOC_Os11g13790
Deletion	Chr11	7819774	7819780	6
Deletion	Chr12	8546932	8546933	1
Deletion	Chr5	9434001	11024000	1590000	222
Deletion	Chr10	9514978	9514981	3
Deletion	Chr9	13152221	13152233	12
Deletion	Chr2	15445819	15445820	1	LOC_Os02g26294
Deletion	Chr5	15804062	15804073	11
Deletion	Chr12	17574050	17574067	17	LOC_Os12g29520
Deletion	Chr1	18829359	18829361	2
Deletion	Chr7	19164358	19164365	7
Deletion	Chr1	19371433	19371505	72
Deletion	Chr2	19855033	19855034	1
Deletion	Chr3	20076228	20076283	55
Deletion	Chr5	23579147	23579148	1
Deletion	Chr8	24914152	24914177	25
Deletion	Chr11	25109812	25109816	4
Deletion	Chr12	25895809	25895813	4	LOC_Os12g41810
Deletion	Chr5	27188430	27188431	1	LOC_Os05g47450
Deletion	Chr2	27346941	27346957	16
Deletion	Chr2	27484520	27484575	55
Deletion	Chr1	29049966	29049975	9	LOC_Os01g50600
Deletion	Chr2	32743086	32743103	17
Deletion	Chr3	33477732	33477733	1
Deletion	Chr2	33868457	33868458	1

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	19695163	19695163	1
Insertion	Chr12	25813217	25813220	4
Insertion	Chr6	26153097	26153099	3
Insertion	Chr1	11358672	11358673	2
Insertion	Chr11	24016098	24016099	2
Insertion	Chr12	18350022	18350023	2
Insertion	Chr3	1417094	1417095	2
Insertion	Chr4	21585150	21585151	2
Insertion	Chr3	12521450	12521450	1
Insertion	Chr6	7561931	7561931	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	916717	925830	2
Inversion	Chr8	2427433	2435528	LOC_Os08g04840
Inversion	Chr12	12448502	24680510
Inversion	Chr9	15877958	15927800	LOC_Os09g26370
Inversion	Chr2	17992504	18258774

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1222901	Chr8	16258229
Translocation	Chr5	3089001	Chr2	16394858
Translocation	Chr2	7954256	Chr1	15637541
Translocation	Chr11	11537183	Chr8	7441757	LOC_Os08g12570
Translocation	Chr11	11579450	Chr2	27655695
Translocation	Chr11	11643136	Chr2	27655651	LOC_Os11g20150
Translocation	Chr11	11643228	Chr3	15725439	LOC_Os11g20150
Translocation	Chr9	20287708	Chr6	22062273

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