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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31248985	C-A	HET	INTRON
SBS	Chr1	37984040	G-A	HET	INTRON
SBS	Chr10	16607758	C-A	HOMO	INTERGENIC
SBS	Chr10	20000424	C-T	HET	INTRON
SBS	Chr10	567693	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g01880
SBS	Chr12	17213776	A-T	HET	INTRON
SBS	Chr2	11173006	A-T	HET	INTERGENIC
SBS	Chr2	12095564	G-A	HOMO	INTERGENIC
SBS	Chr2	14294313	C-G	HET	INTERGENIC
SBS	Chr2	26107462	C-A	HOMO	INTERGENIC
SBS	Chr3	23269234	A-T	HET	INTERGENIC
SBS	Chr3	34352986	G-A	HOMO	INTERGENIC
SBS	Chr4	14317018	A-C	HOMO	INTERGENIC
SBS	Chr4	14940182	A-T	HET	INTERGENIC
SBS	Chr4	14940183	C-T	HET	INTERGENIC
SBS	Chr5	14541297	G-T	HOMO	INTRON
SBS	Chr5	15442838	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g26580
SBS	Chr5	15442839	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g26580
SBS	Chr5	23389221	A-G	HET	INTERGENIC
SBS	Chr5	3232795	A-G	HET	UTR_3_PRIME
SBS	Chr6	25520915	G-C	HET	INTERGENIC
SBS	Chr6	28604747	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g47170
SBS	Chr7	12546638	G-A	HOMO	INTRON
SBS	Chr7	20164188	G-T	HOMO	INTERGENIC
SBS	Chr7	23272887	T-C	HET	INTERGENIC
SBS	Chr7	27911963	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g46690
SBS	Chr7	6890374	A-T	HET	INTERGENIC
SBS	Chr8	10351905	T-C	HET	INTERGENIC
SBS	Chr8	11142083	T-C	HET	INTERGENIC
SBS	Chr8	20378470	C-T	HET	INTERGENIC
SBS	Chr8	22757082	T-C	HOMO	INTERGENIC
SBS	Chr9	11162605	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g18210
SBS	Chr9	11298818	A-T	HET	INTERGENIC
SBS	Chr9	13805119	C-G	HOMO	INTRON

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1615511	1615512	1
Deletion	Chr12	2993061	2993073	12	LOC_Os12g06270
Deletion	Chr6	4758682	4758719	37
Deletion	Chr1	5847464	5847465	1
Deletion	Chr5	6279216	6279219	3
Deletion	Chr2	7380757	7380758	1
Deletion	Chr6	8715184	8715185	1	LOC_Os06g15350
Deletion	Chr1	9069092	9069094	2	LOC_Os01g16100
Deletion	Chr5	13475446	13475448	2
Deletion	Chr4	14268001	14314000	46000	3
Deletion	Chr8	14781001	14887000	106000	17
Deletion	Chr12	14880557	14880558	1
Deletion	Chr4	14940001	15193000	253000	35
Deletion	Chr6	15785801	15785805	4	LOC_Os06g27860
Deletion	Chr11	15865780	15865800	20
Deletion	Chr8	16632332	16632358	26	LOC_Os08g27240
Deletion	Chr9	19369327	19369328	1	LOC_Os09g32450
Deletion	Chr8	19563169	19563186	17
Deletion	Chr1	20092257	20092258	1
Deletion	Chr6	21111909	21111913	4
Deletion	Chr3	21303494	21303495	1	LOC_Os03g38375
Deletion	Chr8	21718206	21718210	4
Deletion	Chr10	22264559	22264866	307
Deletion	Chr1	27084006	27084016	10
Deletion	Chr5	27961822	27961824	2
Deletion	Chr5	28297593	28297594	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	36526727	36526727	1
Insertion	Chr12	9585983	9585984	2
Insertion	Chr3	36148604	36148605	2
Insertion	Chr6	19433937	19433938	2
Insertion	Chr8	2884665	2884665	1
Insertion	Chr9	9197671	9197672	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	533125	590023	LOC_Os10g01820
Inversion	Chr10	533138	590022	LOC_Os10g01820
Inversion	Chr8	10785698	10885645
Inversion	Chr5	14325403	14327669
Inversion	Chr4	14940002	15225349

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2636510	Chr2	8137782	LOC_Os02g14730
Translocation	Chr5	2937970	Chr4	15231989	2
Translocation	Chr6	4640248	Chr1	5999921
Translocation	Chr11	5320383	Chr4	14950536
Translocation	Chr6	5737627	Chr1	5999629
Translocation	Chr9	14083782	Chr8	14660870	LOC_Os08g24290
Translocation	Chr9	14087193	Chr8	14886734	2
Translocation	Chr10	22264582	Chr1	5999629
Translocation	Chr10	22264583	Chr6	4640226
Translocation	Chr12	25546509	Chr8	2637767
Translocation	Chr12	25547630	Chr2	8137784	LOC_Os02g14730

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