Search Results

Mutant Information

Mutant Name	FN1031-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1031-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 49

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10524216	T-A	HET	INTERGENIC
SBS	Chr1	10567945	C-T	HET	INTERGENIC
SBS	Chr1	10660038	C-T	HET	UTR_5_PRIME
SBS	Chr1	15793169	T-G	HOMO	INTRON
SBS	Chr1	34919998	G-C	HET	INTERGENIC
SBS	Chr2	6579241	T-C	HET	INTRON
SBS	Chr2	29970496	C-T	HET	INTERGENIC
SBS	Chr3	688287	C-T	HET	INTERGENIC
SBS	Chr3	7731848	C-A	HET	INTERGENIC
SBS	Chr3	9839413	C-T	HET	INTERGENIC
SBS	Chr3	22811533	C-T	HOMO	INTERGENIC
SBS	Chr3	28501288	G-A	HET	INTRON
SBS	Chr3	29805508	T-C	HET	INTERGENIC
SBS	Chr3	32893619	G-C	HET	INTERGENIC
SBS	Chr4	1032517	G-A	HET	SYNONYMOUS_CODING
SBS	Chr4	21321545	A-G	HET	INTERGENIC
SBS	Chr4	27091154	A-G	HET	INTERGENIC
SBS	Chr4	35496158	T-A	HET	INTERGENIC
SBS	Chr5	3579783	C-T	HOMO	INTERGENIC
SBS	Chr5	9758195	T-G	HET	INTERGENIC
SBS	Chr5	26876380	T-C	HET	INTERGENIC
SBS	Chr6	1428342	T-A	HET	INTERGENIC
SBS	Chr6	10384740	C-G	HET	INTERGENIC
SBS	Chr6	22467073	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g37990
SBS	Chr7	18735941	G-A	HET	INTERGENIC
SBS	Chr8	37969	A-T	HOMO	INTRON
SBS	Chr8	1031828	G-A	HOMO	INTERGENIC
SBS	Chr8	6307654	C-A	HOMO	INTRON
SBS	Chr8	19319727	G-A	HET	INTERGENIC
SBS	Chr8	27061567	T-C	HET	INTERGENIC
SBS	Chr9	4107808	C-G	HOMO	INTERGENIC
SBS	Chr9	6207036	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g11190
SBS	Chr9	8720776	G-T	HOMO	INTRON
SBS	Chr9	14092171	T-C	HET	INTERGENIC
SBS	Chr10	3169012	C-T	HET	INTERGENIC
SBS	Chr10	4200105	C-T	HET	INTERGENIC
SBS	Chr10	6649590	T-A	HET	INTERGENIC
SBS	Chr10	9036224	G-A	HET	SPLICE_SITE_REGION
SBS	Chr10	10778331	T-A	HET	INTERGENIC
SBS	Chr11	1171411	G-A	HET	INTERGENIC
SBS	Chr11	10562486	C-T	HET	INTERGENIC
SBS	Chr11	12905866	C-A	HET	INTERGENIC
SBS	Chr11	13507536	A-G	HET	INTERGENIC
SBS	Chr11	18058099	C-T	HET	INTERGENIC
SBS	Chr12	1236506	T-C	HET	SPLICE_SITE_REGION
SBS	Chr12	9389702	A-G	HOMO	INTERGENIC
SBS	Chr12	11668465	G-A	HET	INTRON
SBS	Chr12	16969469	T-C	HET	INTRON
SBS	Chr12	21963112	C-T	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	690222	690223	1
Deletion	Chr2	719842	719843	1
Deletion	Chr6	1123050	1123054	4
Deletion	Chr11	3519419	3519423	4	LOC_Os11g07060
Deletion	Chr11	4153371	4153376	5
Deletion	Chr6	4315919	4315940	21	LOC_Os06g08660
Deletion	Chr6	5166579	5166607	28
Deletion	Chr6	7562184	7562185	1
Deletion	Chr6	8943463	8944595	1132
Deletion	Chr10	9900682	9900684	2
Deletion	Chr11	10282685	10282698	13	LOC_Os11g18240
Deletion	Chr6	10840338	10840347	9
Deletion	Chr2	12838851	12838852	1
Deletion	Chr11	13966353	13966360	7
Deletion	Chr3	15015413	15015428	15
Deletion	Chr4	16041983	16041987	4
Deletion	Chr7	18574577	18574579	2	LOC_Os07g31350
Deletion	Chr5	20223139	20223140	1
Deletion	Chr12	22298802	22299492	690	LOC_Os12g36440
Deletion	Chr11	25984742	25984747	5
Deletion	Chr8	27625588	27625590	2
Deletion	Chr2	30382001	30394000	12000	3
Deletion	Chr1	34208909	34208928	19

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	17069001	17069002	2
Insertion	Chr7	19025978	19025979	2
Insertion	Chr4	31443242	31443256	15	LOC_Os04g52810
Insertion	Chr11	21961800	21961807	8
Insertion	Chr2	33737920	33737920	1
Insertion	Chr6	28897523	28897523	1
Insertion	Chr8	20535210	20535210	1	LOC_Os08g33050
Insertion	Chr8	23241390	23241390	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	18900203	18902916	LOC_Os07g31800
Inversion	Chr2	30045958	30381787	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2717447	Chr7	24948333	LOC_Os07g41610
Translocation	Chr8	17546062	Chr4	9601802
Translocation	Chr12	22298838	Chr2	1271885	LOC_Os12g36440
Translocation	Chr12	22299474	Chr2	1271880	LOC_Os12g36440
Translocation	Chr11	27840964	Chr7	21053039
Translocation	Chr6	29699152	Chr2	30393448	2
Translocation	Chr6	29699894	Chr2	30361792	LOC_Os06g49000

Main menu

You are here

Search Results