Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN1040-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1040-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 22538523 | A-C | HOMO | UTR_3_PRIME | |
| SBS | Chr10 | 12403765 | T-C | HET | INTERGENIC | |
| SBS | Chr10 | 3168718 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 16749525 | G-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 22896133 | A-G | HET | INTERGENIC | |
| SBS | Chr11 | 23375925 | T-A | HET | UTR_3_PRIME | |
| SBS | Chr11 | 23375926 | C-T | HET | UTR_3_PRIME | |
| SBS | Chr12 | 13857693 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 428638 | A-G | HOMO | INTERGENIC | |
| SBS | Chr2 | 12244485 | C-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 34071712 | T-A | HOMO | INTRON | |
| SBS | Chr2 | 34071713 | T-A | HOMO | INTRON | |
| SBS | Chr2 | 35615200 | G-C | HOMO | INTERGENIC | |
| SBS | Chr3 | 10144108 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 10694595 | G-A | HET | INTERGENIC | |
| SBS | Chr3 | 29955617 | T-A | HOMO | INTERGENIC | |
| SBS | Chr3 | 32984607 | G-A | HOMO | UTR_3_PRIME | |
| SBS | Chr4 | 11446518 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 1386895 | T-A | HET | STOP_GAINED | LOC_Os04g03250 |
| SBS | Chr4 | 18064987 | T-C | HET | INTERGENIC | |
| SBS | Chr4 | 21072819 | C-G | HET | INTERGENIC | |
| SBS | Chr4 | 24707342 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g41670 |
| SBS | Chr4 | 33991230 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 12698715 | A-C | HET | INTERGENIC | |
| SBS | Chr5 | 16171001 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 16462732 | G-T | HET | INTERGENIC | |
| SBS | Chr6 | 15539760 | A-G | HET | INTERGENIC | |
| SBS | Chr7 | 18886595 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 9379530 | A-T | HET | INTERGENIC |
Deletions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 769193 | 769195 | 2 | |
| Deletion | Chr2 | 1995049 | 1995053 | 4 | |
| Deletion | Chr12 | 7371153 | 7371159 | 6 | |
| Deletion | Chr1 | 7929358 | 7929378 | 20 | |
| Deletion | Chr1 | 10984387 | 10984388 | 1 | |
| Deletion | Chr2 | 12066353 | 12066360 | 7 | LOC_Os02g20460 |
| Deletion | Chr2 | 13816096 | 13816105 | 9 | |
| Deletion | Chr11 | 16417978 | 16417983 | 5 | LOC_Os11g28510 |
| Deletion | Chr3 | 17563893 | 17563894 | 1 | LOC_Os03g30810 |
| Deletion | Chr12 | 20911174 | 20911177 | 3 | |
| Deletion | Chr2 | 20911589 | 20911593 | 4 | |
| Deletion | Chr1 | 21407601 | 21407613 | 12 | |
| Deletion | Chr6 | 22843905 | 22843908 | 3 | |
| Deletion | Chr2 | 24274541 | 24274542 | 1 | |
| Deletion | Chr2 | 25143676 | 25143693 | 17 | |
| Deletion | Chr3 | 29259478 | 29259492 | 14 | |
| Deletion | Chr4 | 29991403 | 29991408 | 5 | |
| Deletion | Chr2 | 35376467 | 35376469 | 2 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 19101352 | 19101352 | 1 | |
| Insertion | Chr2 | 4396816 | 4396817 | 2 | |
| Insertion | Chr5 | 6703729 | 6703730 | 2 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 2960887 | 3608859 | LOC_Os12g06230 |
| Inversion | Chr12 | 3608862 | 3949667 | LOC_Os12g07810 |
| Inversion | Chr8 | 6367956 | 6838198 | LOC_Os08g10810 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 13397036 | Chr2 | 2470221 |