Search Results
Mutant Information |
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Mutant Name | FN1043-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN1043-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Phenotype |
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Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 19
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
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SBS | Chr1 | 1905070 | A-T | HET | UTR_3_PRIME | |
SBS | Chr1 | 40467852 | G-A | HOMO | INTERGENIC | |
SBS | Chr2 | 2086172 | C-T | HET | INTERGENIC | |
SBS | Chr2 | 3532015 | A-G | HET | INTERGENIC | |
SBS | Chr2 | 15012017 | A-G | HOMO | INTERGENIC | |
SBS | Chr3 | 19696004 | C-T | HOMO | INTRON | |
SBS | Chr5 | 550717 | G-A | HOMO | INTERGENIC | |
SBS | Chr5 | 28808754 | T-A | HOMO | INTERGENIC | |
SBS | Chr6 | 21031895 | C-T | HOMO | INTERGENIC | |
SBS | Chr7 | 5059871 | C-T | HOMO | INTERGENIC | |
SBS | Chr8 | 14966672 | T-C | HOMO | INTERGENIC | |
SBS | Chr9 | 941791 | A-T | HET | INTERGENIC | |
SBS | Chr9 | 4651459 | C-T | HOMO | INTRON | |
SBS | Chr9 | 6063978 | G-A | HET | INTRON | |
SBS | Chr9 | 9236679 | G-C | HOMO | INTERGENIC | |
SBS | Chr10 | 11447268 | G-A | HET | INTERGENIC | |
SBS | Chr11 | 7249066 | A-C | HET | INTERGENIC | |
SBS | Chr11 | 10667584 | G-A | HET | STOP_GAINED | LOC_Os11g18790 |
SBS | Chr12 | 21458992 | T-C | HET | INTRON |
Deletions: 13
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
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Deletion | Chr10 | 795124 | 795131 | 7 | LOC_Os10g02250 |
Deletion | Chr5 | 997540 | 997541 | 1 | LOC_Os05g02770 |
Deletion | Chr8 | 5731291 | 5731296 | 5 | |
Deletion | Chr6 | 7998467 | 7998470 | 3 | |
Deletion | Chr11 | 9770926 | 9770928 | 2 | LOC_Os11g17530 |
Deletion | Chr5 | 11894141 | 11894144 | 3 | |
Deletion | Chr12 | 19874248 | 19874252 | 4 | |
Deletion | Chr2 | 22708437 | 22708440 | 3 | |
Deletion | Chr8 | 24715001 | 24729000 | 14000 | 4 |
Deletion | Chr8 | 24949001 | 24972000 | 23000 | 3 |
Deletion | Chr5 | 28725001 | 28750000 | 25000 | 6 |
Deletion | Chr4 | 30317110 | 30317111 | 1 | |
Deletion | Chr1 | 33863510 | 33863513 | 3 |
No Insertion
Inversions: 3
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 24669216 | 24715785 | |
Inversion | Chr8 | 24669231 | 24729700 | LOC_Os08g39150 |
Inversion | Chr5 | 28669258 | 28724982 | LOC_Os05g50120 |
No Translocation