Search Nipponbare

Mutant Information

Mutant Name	FN1048-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1048-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 45

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10356436	A-T	HET	INTERGENIC
SBS	Chr1	20863020	T-G	HET	INTERGENIC
SBS	Chr1	22631028	T-G	HET	INTERGENIC
SBS	Chr1	23808945	C-T	HET	INTERGENIC
SBS	Chr1	25399183	G-T	HET	INTERGENIC
SBS	Chr1	25399184	G-T	HET	INTERGENIC
SBS	Chr1	29820835	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g51870
SBS	Chr1	3976504	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g08190
SBS	Chr11	16627096	C-T	HET	INTERGENIC
SBS	Chr11	26593779	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g44014
SBS	Chr12	10802794	T-C	HET	INTERGENIC
SBS	Chr12	2789164	T-C	HET	INTERGENIC
SBS	Chr2	22243344	C-T	HET	INTERGENIC
SBS	Chr2	22899544	A-T	HET	INTERGENIC
SBS	Chr2	30361514	T-A	HOMO	INTERGENIC
SBS	Chr2	5527166	T-A	HOMO	INTRON
SBS	Chr3	17820005	T-C	HET	INTERGENIC
SBS	Chr3	20158363	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g36350
SBS	Chr3	24447501	C-G	HET	INTERGENIC
SBS	Chr3	33055081	A-T	HET	INTRON
SBS	Chr3	35100928	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g61920
SBS	Chr4	12415569	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr4	26393897	A-G	HET	INTERGENIC
SBS	Chr4	33801963	T-G	HET	INTERGENIC
SBS	Chr5	2473184	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g05090
SBS	Chr5	27566594	A-T	HET	INTERGENIC
SBS	Chr5	5016518	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g09040
SBS	Chr6	10003129	A-G	HET	INTERGENIC
SBS	Chr6	12428579	C-G	HET	INTERGENIC
SBS	Chr6	14927524	T-A	HET	INTERGENIC
SBS	Chr6	15066808	A-G	HET	INTRON
SBS	Chr6	15745350	A-G	HET	INTERGENIC
SBS	Chr6	25148430	T-A	HET	INTERGENIC
SBS	Chr6	25390116	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g42280
SBS	Chr7	10404960	G-T	HET	INTERGENIC
SBS	Chr7	1065828	A-G	HET	INTERGENIC
SBS	Chr7	27294492	C-T	HET	INTERGENIC
SBS	Chr7	3326238	C-G	HET	INTRON
SBS	Chr7	7898368	C-T	HET	INTERGENIC
SBS	Chr7	9598076	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g16400
SBS	Chr8	12712852	T-C	HET	INTRON
SBS	Chr8	20923220	G-A	HOMO	INTERGENIC
SBS	Chr8	7644392	T-C	HOMO	INTRON
SBS	Chr9	12081052	T-C	HOMO	INTRON
SBS	Chr9	7877999	G-A	HOMO	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	484056	484077	21
Deletion	Chr12	658166	658170	4	LOC_Os12g02150
Deletion	Chr3	6307689	6307690	1
Deletion	Chr7	6720252	6720258	6	LOC_Os07g12030
Deletion	Chr6	7128848	7128861	13
Deletion	Chr2	7931565	7931570	5
Deletion	Chr5	8549394	8549395	1
Deletion	Chr2	10863732	10863733	1
Deletion	Chr5	11980262	11980270	8
Deletion	Chr6	12441788	12444151	2363	LOC_Os06g21570
Deletion	Chr6	13885991	13886001	10	LOC_Os06g23770
Deletion	Chr6	13946684	13946719	35
Deletion	Chr11	14595001	15235000	640000	92
Deletion	Chr11	17535697	17535710	13
Deletion	Chr6	20974975	20974976	1
Deletion	Chr10	21424402	21424406	4	LOC_Os10g39990
Deletion	Chr7	21755066	21755072	6	LOC_Os07g36390
Deletion	Chr6	22277845	22277852	7
Deletion	Chr11	25421562	25421594	32
Deletion	Chr12	27164289	27164294	5
Deletion	Chr4	30070454	30070463	9
Deletion	Chr1	30335001	30382000	47000	8
Deletion	Chr1	31275039	31275042	3
Deletion	Chr1	31635402	31635403	1
Deletion	Chr4	32833417	32833418	1
Deletion	Chr3	33117326	33117357	31
Deletion	Chr4	33570561	33570562	1
Deletion	Chr1	34707330	34707342	12	LOC_Os01g60040
Deletion	Chr4	34739460	34739462	2
Deletion	Chr1	42473455	42473459	4

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	17838567	17838570	4
Insertion	Chr11	17165681	17165681	1
Insertion	Chr4	20326665	20326665	1
Insertion	Chr6	28133805	28133806	2	LOC_Os06g46366
Insertion	Chr8	19998614	19998614	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6516207	6585935	LOC_Os05g11510
Inversion	Chr5	6524232	6585941
Inversion	Chr11	7903490	9827468
Inversion	Chr11	8875221	10935775	LOC_Os11g19160
Inversion	Chr11	9823939	9828521
Inversion	Chr11	14580179	15341443
Inversion	Chr11	15235102	15341477

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	9574205	Chr1	6539783
Translocation	Chr6	12441794	Chr3	4348338	LOC_Os06g21570
Translocation	Chr6	12444143	Chr3	4348298
Translocation	Chr11	19839718	Chr4	2841993	LOC_Os11g33942

Main menu

You are here

Search Nipponbare