Search Results
| Mutant Information |
|---|
| Mutant Name | FN1049-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1049-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13119445 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 13119446 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 14651777 | C-G | HET | INTERGENIC | |
| SBS | Chr1 | 16687835 | G-T | HET | INTRON | |
| SBS | Chr1 | 19888757 | A-C | HET | INTERGENIC | |
| SBS | Chr2 | 11795839 | G-A | HOMO | STOP_GAINED | LOC_Os02g20030 |
| SBS | Chr2 | 27790555 | C-T | HET | INTRON | |
| SBS | Chr4 | 1381967 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g03250 |
| SBS | Chr4 | 13203909 | A-G | HOMO | INTRON | |
| SBS | Chr5 | 6155985 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 7379723 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g13320 |
| SBS | Chr5 | 20125290 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 1398816 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g03610 |
| SBS | Chr6 | 1398817 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os06g03610 |
| SBS | Chr6 | 16601602 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 3456889 | G-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 12278513 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 21521246 | C-T | HOMO | INTERGENIC | |
| SBS | Chr8 | 27454714 | C-A | HET | INTERGENIC | |
| SBS | Chr9 | 3907642 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 6265881 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 13580341 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g22510 |
| SBS | Chr10 | 1530622 | C-T | HET | UTR_5_PRIME | |
| SBS | Chr10 | 22297271 | G-C | HOMO | UTR_5_PRIME | |
| SBS | Chr11 | 991993 | C-A | HOMO | INTERGENIC | |
| SBS | Chr11 | 7551094 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 14662527 | A-T | HET | INTRON | |
| SBS | Chr11 | 17264519 | C-T | HET | INTRON | |
| SBS | Chr12 | 9130182 | G-A | HET | INTERGENIC | |
| SBS | Chr12 | 21685899 | A-C | HET | INTERGENIC |
Deletions: 22
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr1 | 341341 | 341347 | 6 | |
| Deletion | Chr8 | 689714 | 689724 | 10 | |
| Deletion | Chr5 | 1028001 | 1098000 | 70000 | 10 |
| Deletion | Chr9 | 2691258 | 2691262 | 4 | LOC_Os09g04995 |
| Deletion | Chr1 | 3777225 | 3777229 | 4 | |
| Deletion | Chr6 | 5575127 | 5575175 | 48 | |
| Deletion | Chr10 | 6112892 | 6112893 | 1 | |
| Deletion | Chr8 | 6176130 | 6176135 | 5 | |
| Deletion | Chr6 | 9416988 | 9416997 | 9 | |
| Deletion | Chr7 | 9668741 | 9668742 | 1 | |
| Deletion | Chr9 | 9720392 | 9720396 | 4 | |
| Deletion | Chr10 | 13078331 | 13078332 | 1 | |
| Deletion | Chr4 | 14239764 | 14239802 | 38 | LOC_Os04g24790 |
| Deletion | Chr2 | 14620690 | 14620714 | 24 | |
| Deletion | Chr1 | 14959001 | 15082000 | 123000 | 17 |
| Deletion | Chr3 | 15680036 | 15680044 | 8 | |
| Deletion | Chr1 | 17022091 | 17022106 | 15 | |
| Deletion | Chr1 | 18599392 | 18599400 | 8 | |
| Deletion | Chr5 | 19313833 | 19313834 | 1 | |
| Deletion | Chr4 | 23110685 | 23110686 | 1 | LOC_Os04g38880 |
| Deletion | Chr11 | 26131216 | 26131217 | 1 | |
| Deletion | Chr8 | 27914573 | 27914579 | 6 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr7 | 6952067 | 6952067 | 1 | LOC_Os07g12320 |
| Insertion | Chr3 | 58766 | 58766 | 1 | LOC_Os03g01080 |
| Insertion | Chr4 | 19562893 | 19562893 | 1 |
No Inversion
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 4446212 | Chr2 | 13153398 | |
| Translocation | Chr7 | 8744323 | Chr2 | 12241709 | |
| Translocation | Chr11 | 13220832 | Chr6 | 7220589 | |
| Translocation | Chr12 | 14401104 | Chr7 | 16636629 |