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Mutant Information

Mutant Name	FN1060-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1060-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19546562	C-G	HET	INTERGENIC
SBS	Chr1	39624507	C-T	HOMO	INTRON
SBS	Chr10	14090155	C-T	HET	INTERGENIC
SBS	Chr11	11107428	T-C	HET	INTERGENIC
SBS	Chr11	15214155	C-T	HET	INTERGENIC
SBS	Chr12	15290807	C-T	HOMO	INTERGENIC
SBS	Chr12	25515799	T-C	HET	INTRON
SBS	Chr2	10600531	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g18280
SBS	Chr2	31702300	G-A	HOMO	INTERGENIC
SBS	Chr2	33267463	T-A	HET	INTERGENIC
SBS	Chr2	951100	T-A	HET	INTRON
SBS	Chr3	18781559	A-G	HOMO	INTERGENIC
SBS	Chr3	21883221	T-G	HOMO	INTRON
SBS	Chr3	33127137	C-A	HET	INTERGENIC
SBS	Chr3	7550098	T-C	HET	INTRON
SBS	Chr3	7550099	T-C	HET	INTRON
SBS	Chr4	27654242	A-G	HET	INTERGENIC
SBS	Chr4	6435231	C-A	HET	INTERGENIC
SBS	Chr5	15517336	G-A	HOMO	INTRON
SBS	Chr5	15658304	A-G	HET	INTRON
SBS	Chr5	29891791	T-G	HOMO	INTRON
SBS	Chr5	549263	G-T	HET	INTERGENIC
SBS	Chr5	6555568	A-G	HOMO	INTERGENIC
SBS	Chr5	8320712	C-T	HET	INTRON
SBS	Chr6	183937	C-T	HET	INTRON
SBS	Chr6	20452463	C-G	HET	INTERGENIC
SBS	Chr6	27490856	A-T	HET	INTERGENIC
SBS	Chr6	4890513	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g09610
SBS	Chr6	4890530	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	13647820	T-C	HET	INTRON
SBS	Chr8	11636722	C-T	HET	INTERGENIC
SBS	Chr8	2157407	G-A	HET	INTRON
SBS	Chr8	8455188	G-A	HET	SPLICE_SITE_REGION
SBS	Chr9	12403577	G-A	HET	INTERGENIC
SBS	Chr9	12404585	A-T	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1812003	1812005	2
Deletion	Chr5	3701946	3701981	35
Deletion	Chr5	5910215	5910216	1	LOC_Os05g10730
Deletion	Chr6	6349146	6349147	1	LOC_Os06g11920
Deletion	Chr9	6376505	6376514	9
Deletion	Chr4	6578777	6578786	9
Deletion	Chr5	7091674	7091686	12
Deletion	Chr6	7587193	7587530	337
Deletion	Chr12	11819267	11819280	13
Deletion	Chr6	12457313	12457320	7	LOC_Os06g21600
Deletion	Chr11	14653116	14653134	18	LOC_Os11g25690
Deletion	Chr9	16615113	16615125	12
Deletion	Chr1	17494001	17852000	358000	54
Deletion	Chr8	18539610	18539615	5
Deletion	Chr7	19185490	19185504	14
Deletion	Chr11	21127686	21127693	7
Deletion	Chr7	21929272	21929274	2
Deletion	Chr6	23101963	23101965	2	LOC_Os06g38940
Deletion	Chr12	24186535	24186551	16	LOC_Os12g39310
Deletion	Chr6	26971128	26971139	11
Deletion	Chr6	27032175	27032201	26
Deletion	Chr7	28864404	28864405	1	LOC_Os07g48310
Deletion	Chr1	38441013	38441019	6

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	16099590	16099605	16

No Inversion

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1482576	Chr2	9635648	LOC_Os12g03680
Translocation	Chr8	6896137	Chr4	1405353	LOC_Os04g03300
Translocation	Chr5	8774636	Chr4	16102013	LOC_Os04g27250
Translocation	Chr9	19075659	Chr6	7587521	2
Translocation	Chr9	19076131	Chr6	7587216	2

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