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| Mutant Information |
|---|
| Mutant Name | FN1061-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1061-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 38
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11392575 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 17673897 | A-T | HET | INTERGENIC | |
| SBS | Chr1 | 29977604 | A-G | HET | INTERGENIC | |
| SBS | Chr1 | 34037764 | C-T | HET | INTERGENIC | |
| SBS | Chr10 | 6314510 | C-A | HET | INTERGENIC | |
| SBS | Chr10 | 8212879 | A-T | HET | SYNONYMOUS_CODING | |
| SBS | Chr11 | 11668510 | G-C | HET | UTR_3_PRIME | |
| SBS | Chr11 | 20151331 | A-T | HET | INTERGENIC | |
| SBS | Chr11 | 20151338 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 22427572 | G-A | HET | INTERGENIC | |
| SBS | Chr11 | 3458495 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 11795839 | G-A | HOMO | STOP_GAINED | LOC_Os02g20030 |
| SBS | Chr2 | 13184747 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 14758665 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 16929135 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 22546222 | C-T | HET | INTERGENIC | |
| SBS | Chr2 | 22593290 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 23269000 | C-T | HOMO | INTRON | |
| SBS | Chr3 | 4353086 | A-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 3149355 | A-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 32556409 | G-T | HET | INTERGENIC | |
| SBS | Chr5 | 10955541 | A-T | HET | INTERGENIC | |
| SBS | Chr5 | 12124653 | C-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr5 | 12938447 | G-T | HET | INTERGENIC | |
| SBS | Chr5 | 21676294 | G-A | HOMO | INTERGENIC | |
| SBS | Chr5 | 7226938 | T-A | HET | INTERGENIC | |
| SBS | Chr6 | 10897789 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 12449908 | T-C | HOMO | INTERGENIC | |
| SBS | Chr6 | 17448486 | G-T | HOMO | INTERGENIC | |
| SBS | Chr7 | 17311132 | C-A | HOMO | INTERGENIC | |
| SBS | Chr7 | 28110776 | T-C | HOMO | INTERGENIC | |
| SBS | Chr7 | 7352871 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 11837595 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 1433231 | C-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g03130 |
| SBS | Chr8 | 2357935 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g04730 |
| SBS | Chr8 | 4214358 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 1132698 | T-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 7033115 | A-G | HOMO | INTERGENIC |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 1403901 | 1403911 | 10 | |
| Deletion | Chr4 | 3246001 | 3747000 | 501000 | 74 |
| Deletion | Chr1 | 3360977 | 3360979 | 2 | LOC_Os01g07120 |
| Deletion | Chr10 | 7993742 | 7993744 | 2 | LOC_Os10g15310 |
| Deletion | Chr7 | 11006820 | 11006823 | 3 | |
| Deletion | Chr5 | 11907456 | 11907459 | 3 | |
| Deletion | Chr9 | 13176624 | 13176649 | 25 | |
| Deletion | Chr1 | 14625163 | 14625169 | 6 | LOC_Os01g25820 |
| Deletion | Chr9 | 15449497 | 15449513 | 16 | LOC_Os09g25770 |
| Deletion | Chr3 | 16397696 | 16397697 | 1 | LOC_Os03g28910 |
| Deletion | Chr3 | 20266675 | 20266684 | 9 | |
| Deletion | Chr12 | 20688269 | 20688270 | 1 | |
| Deletion | Chr2 | 21352849 | 21352852 | 3 | |
| Deletion | Chr12 | 26732786 | 26732797 | 11 | |
| Deletion | Chr6 | 27257000 | 27257001 | 1 | |
| Deletion | Chr2 | 30329803 | 30329812 | 9 | |
| Deletion | Chr3 | 30507957 | 30507962 | 5 | LOC_Os03g53180 |
| Deletion | Chr6 | 31140177 | 31140178 | 1 | |
| Deletion | Chr2 | 34708393 | 34708396 | 3 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 10553487 | 10553487 | 1 | |
| Insertion | Chr5 | 16305052 | 16305052 | 1 | |
| Insertion | Chr7 | 28551625 | 28551625 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 2372818 | 2950812 | 2 |
| Inversion | Chr11 | 8121485 | 11650696 | 2 |
| Inversion | Chr3 | 34491585 | 34678444 | LOC_Os03g60670 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 15003017 | Chr2 | 34496373 | LOC_Os02g56354 |
| Translocation | Chr10 | 15487869 | Chr3 | 9683528 | LOC_Os03g17410 |
| Translocation | Chr10 | 15540088 | Chr3 | 9681406 | 2 |
| Translocation | Chr12 | 27296155 | Chr8 | 3913716 | LOC_Os12g44000 |