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Mutant Information

Mutant Name	FN1075-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1075-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 52

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10093467	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g18040
SBS	Chr1	11559019	C-G	HOMO	INTERGENIC
SBS	Chr1	15838395	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g28270
SBS	Chr1	17952043	A-G	HOMO	INTERGENIC
SBS	Chr1	26561629	A-G	HET	INTERGENIC
SBS	Chr1	32893070	C-T	HET	INTERGENIC
SBS	Chr1	41117889	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g71050
SBS	Chr10	12604490	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g24560
SBS	Chr10	21486934	C-T	HOMO	UTR_3_PRIME
SBS	Chr10	4015204	T-G	HOMO	SYNONYMOUS_CODING
SBS	Chr11	10682245	A-T	HET	INTRON
SBS	Chr11	2667818	A-G	HOMO	INTERGENIC
SBS	Chr11	332935	T-A	HET	INTERGENIC
SBS	Chr11	5869009	G-A	HOMO	INTERGENIC
SBS	Chr2	11610628	G-T	HET	INTERGENIC
SBS	Chr2	20537786	G-A	HET	INTRON
SBS	Chr2	20895932	T-C	HET	INTERGENIC
SBS	Chr2	22196076	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g36800
SBS	Chr2	24501257	C-T	HET	INTRON
SBS	Chr2	34022808	G-T	HET	INTERGENIC
SBS	Chr2	34586845	T-A	HET	INTERGENIC
SBS	Chr3	13108725	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g22690
SBS	Chr3	20791469	G-A	HET	INTERGENIC
SBS	Chr3	28083227	G-C	HOMO	INTERGENIC
SBS	Chr3	30106230	G-A	HET	INTERGENIC
SBS	Chr3	5250028	A-G	HET	INTERGENIC
SBS	Chr4	24906049	A-T	HET	INTERGENIC
SBS	Chr5	11752413	C-G	HET	INTERGENIC
SBS	Chr5	17768712	T-C	HET	INTERGENIC
SBS	Chr5	19963032	T-G	HET	UTR_5_PRIME
SBS	Chr5	5190180	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g09290
SBS	Chr5	8328982	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g14620
SBS	Chr5	9040212	G-A	HET	INTERGENIC
SBS	Chr6	10610156	T-A	HET	INTRON
SBS	Chr6	17934547	T-A	HET	INTERGENIC
SBS	Chr6	21846001	G-T	HOMO	INTERGENIC
SBS	Chr6	26600582	T-A	HET	INTERGENIC
SBS	Chr6	30894083	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	30969048	C-T	HOMO	INTRON
SBS	Chr6	994243	T-C	HOMO	INTERGENIC
SBS	Chr7	235830	A-G	HOMO	INTERGENIC
SBS	Chr7	26445279	G-A	HET	INTERGENIC
SBS	Chr7	8117095	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	8680791	T-C	HET	INTERGENIC
SBS	Chr8	1318622	G-A	HET	INTERGENIC
SBS	Chr8	16451361	A-G	HET	INTERGENIC
SBS	Chr8	8303236	C-A	HET	INTRON
SBS	Chr9	10010598	A-G	HET	INTRON
SBS	Chr9	11688937	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	15810953	G-C	HOMO	INTERGENIC
SBS	Chr9	659188	G-A	HET	INTERGENIC
SBS	Chr9	854260	T-C	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1670622	1670631	9	LOC_Os08g03570
Deletion	Chr10	5028307	5028314	7
Deletion	Chr2	6000329	6000334	5
Deletion	Chr10	6192772	6192822	50
Deletion	Chr11	6289689	6289712	23
Deletion	Chr6	6513001	6556000	43000	5
Deletion	Chr12	9968414	9968415	1
Deletion	Chr8	11418342	11418343	1
Deletion	Chr4	12255954	12311893	55939	11
Deletion	Chr5	16392001	16446000	54000	7
Deletion	Chr6	16466740	16467090	350
Deletion	Chr11	17080461	17080462	1
Deletion	Chr1	17386223	17386225	2
Deletion	Chr9	18098936	18098946	10	LOC_Os09g29780
Deletion	Chr1	18273001	18370000	97000	12
Deletion	Chr12	18307813	18307832	19
Deletion	Chr11	20162928	20162932	4	LOC_Os11g34410
Deletion	Chr10	22047190	22047195	5
Deletion	Chr2	25007731	25007737	6	LOC_Os02g41680
Deletion	Chr5	25828951	25828953	2
Deletion	Chr4	30672721	30672724	3
Deletion	Chr1	31977079	31977085	6
Deletion	Chr1	32444859	32444861	2
Deletion	Chr1	34312130	34312162	32

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	24352689	24352689	1
Insertion	Chr12	19403926	19403927	2
Insertion	Chr12	692137	692138	2
Insertion	Chr3	17167438	17167438	1
Insertion	Chr5	17289595	17289598	4

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3646191	3747092	LOC_Os12g07530

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	16466770	Chr5	29370720	LOC_Os05g51200
Translocation	Chr6	16467079	Chr5	29505342

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