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Mutant Information

Mutant Name	FN1080-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1080-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 42

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12194057	A-G	HET	INTERGENIC
SBS	Chr1	16962520	T-G	HET	SPLICE_SITE_REGION
SBS	Chr1	22904478	T-A	HET	INTERGENIC
SBS	Chr1	5587510	C-T	HET	INTERGENIC
SBS	Chr10	12057585	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g23110
SBS	Chr11	13169703	A-G	HOMO	INTERGENIC
SBS	Chr11	21328438	C-T	HET	INTERGENIC
SBS	Chr12	2066555	C-T	HET	INTERGENIC
SBS	Chr12	3824476	A-C	HET	SYNONYMOUS_CODING
SBS	Chr2	20541601	G-C	HET	INTERGENIC
SBS	Chr2	23366033	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	23658613	A-T	HET	INTRON
SBS	Chr2	25215812	G-A	HET	INTRON
SBS	Chr2	6142240	C-T	HET	INTERGENIC
SBS	Chr2	8906321	A-G	HET	INTERGENIC
SBS	Chr3	1009729	T-C	HET	INTRON
SBS	Chr3	1009749	A-T	HET	INTRON
SBS	Chr3	10261920	T-A	HET	INTRON
SBS	Chr3	21382866	G-A	HET	INTERGENIC
SBS	Chr3	21568470	A-C	HET	INTERGENIC
SBS	Chr3	24374368	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g43610
SBS	Chr3	28923535	T-G	HET	INTERGENIC
SBS	Chr4	10061202	C-A	HET	INTERGENIC
SBS	Chr4	1511023	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03490
SBS	Chr4	28766209	G-A	HET	INTERGENIC
SBS	Chr4	33069023	G-T	HOMO	INTERGENIC
SBS	Chr4	8757671	G-A	HET	INTERGENIC
SBS	Chr5	11352027	G-A	HET	INTRON
SBS	Chr5	25643240	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g44100
SBS	Chr6	14163617	C-T	HET	INTERGENIC
SBS	Chr6	17385584	T-A	HET	INTERGENIC
SBS	Chr6	27451654	C-A	HOMO	INTERGENIC
SBS	Chr6	27451655	C-A	HOMO	INTERGENIC
SBS	Chr7	13776145	T-A	HOMO	INTERGENIC
SBS	Chr7	19603789	C-G	HOMO	INTRON
SBS	Chr7	25951068	A-G	HET	INTERGENIC
SBS	Chr7	26879848	A-G	HET	INTERGENIC
SBS	Chr7	5223040	C-A	HOMO	INTRON
SBS	Chr8	12103181	C-T	HET	INTERGENIC
SBS	Chr8	4123060	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g07360
SBS	Chr9	1826990	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g03640
SBS	Chr9	22331835	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g38890

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	394364	394368	4	LOC_Os02g01710
Deletion	Chr5	638062	638133	71
Deletion	Chr5	2131594	2131596	2
Deletion	Chr3	6789116	6789125	9
Deletion	Chr12	10828612	10828615	3
Deletion	Chr11	11053115	11053116	1
Deletion	Chr4	11426929	11426941	12
Deletion	Chr4	11505525	11505538	13
Deletion	Chr3	12810397	12810404	7
Deletion	Chr7	19603742	19603744	2
Deletion	Chr12	22492494	22492521	27
Deletion	Chr1	23223832	23223833	1
Deletion	Chr6	26584308	26584309	1
Deletion	Chr11	28242167	28242170	3	LOC_Os11g46990
Deletion	Chr5	29077691	29077701	10
Deletion	Chr3	35760288	35760327	39

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	12682472	12682472	1
Insertion	Chr10	10335433	10335433	1
Insertion	Chr3	7707175	7707183	9	LOC_Os03g14205
Insertion	Chr7	27877529	27877529	1
Insertion	Chr8	22265044	22265044	1
Insertion	Chr9	10760409	10760414	6

Inversions: 9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	8755148	8852729
Inversion	Chr5	14034814	14141044	LOC_Os05g24500
Inversion	Chr5	18000375	18265182	2
Inversion	Chr5	18000401	18265692	LOC_Os05g30980
Inversion	Chr5	18265387	18752043	LOC_Os05g31410
Inversion	Chr5	18265684	18752043
Inversion	Chr7	19544575	21155691	2
Inversion	Chr7	19551818	21155704	LOC_Os07g35370
Inversion	Chr5	26352463	26359062

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr9	8755134	Chr5	25363240
Translocation	Chr12	8840820	Chr7	19482301
Translocation	Chr9	8852715	Chr5	25364224

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