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Mutant Information

Mutant Name	FN1085-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1085-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16746424	C-T	HOMO	INTERGENIC
SBS	Chr1	22164879	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39380
SBS	Chr1	36569064	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g63100
SBS	Chr1	36910778	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g63640
SBS	Chr11	17477102	C-T	HET	INTERGENIC
SBS	Chr11	1865810	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	8927668	T-C	HET	SYNONYMOUS_CODING
SBS	Chr11	9115770	G-A	HET	INTRON
SBS	Chr12	26966844	C-T	HOMO	INTERGENIC
SBS	Chr2	18911614	C-T	HET	INTRON
SBS	Chr2	33241532	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g54220
SBS	Chr2	8185325	C-T	HET	INTERGENIC
SBS	Chr3	10539211	G-T	HET	INTERGENIC
SBS	Chr3	17103186	G-T	HOMO	INTERGENIC
SBS	Chr3	24512691	G-A	HET	INTERGENIC
SBS	Chr3	31045822	C-T	HET	INTERGENIC
SBS	Chr3	8077393	C-T	HET	INTERGENIC
SBS	Chr3	8077394	A-T	HET	INTERGENIC
SBS	Chr4	13103088	C-T	HOMO	INTERGENIC
SBS	Chr4	32291668	C-T	HET	INTERGENIC
SBS	Chr4	35403111	A-G	HET	INTERGENIC
SBS	Chr5	10702693	T-A	HET	INTERGENIC
SBS	Chr5	29582036	G-T	HET	INTERGENIC
SBS	Chr5	8128413	C-T	HET	INTERGENIC
SBS	Chr6	17731344	A-G	HET	INTERGENIC
SBS	Chr6	23833534	G-A	HET	INTERGENIC
SBS	Chr6	29569577	G-A	HET	INTERGENIC
SBS	Chr7	10594479	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g17910
SBS	Chr7	21276557	G-C	HOMO	INTERGENIC
SBS	Chr7	6950256	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr7	8047538	C-T	HET	INTERGENIC
SBS	Chr8	12272649	C-A	HOMO	UTR_5_PRIME
SBS	Chr8	13219128	C-T	HET	INTERGENIC
SBS	Chr8	15589488	G-A	HOMO	INTERGENIC
SBS	Chr8	20094347	C-T	HOMO	INTERGENIC
SBS	Chr8	5425612	T-A	HET	INTRON
SBS	Chr9	18752368	G-A	HET	UTR_3_PRIME
SBS	Chr9	22241545	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g38690

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	622350	622364	14
Deletion	Chr6	2337555	2337568	13	LOC_Os06g05209
Deletion	Chr8	2813001	2850000	37000	6
Deletion	Chr12	3766896	3766909	13
Deletion	Chr9	4344011	4344012	1
Deletion	Chr8	6502753	6502768	15
Deletion	Chr1	7103768	7103778	10
Deletion	Chr12	7256285	7256289	4
Deletion	Chr7	8021370	8021400	30
Deletion	Chr6	8168748	8168752	4
Deletion	Chr5	8558035	8558041	6
Deletion	Chr9	10781390	10781392	2
Deletion	Chr3	13033534	13033541	7	LOC_Os03g22610
Deletion	Chr9	13731036	13731043	7
Deletion	Chr11	14219313	14219314	1
Deletion	Chr1	14369435	14369437	2
Deletion	Chr5	15083582	15083587	5
Deletion	Chr2	19922142	19922151	9
Deletion	Chr8	20764814	20764816	2
Deletion	Chr12	24292606	24292607	1
Deletion	Chr5	26083815	26083826	11	LOC_Os05g44880
Deletion	Chr3	26622283	26622297	14
Deletion	Chr4	27384558	27384582	24
Deletion	Chr6	30272957	30272958	1
Deletion	Chr1	40035227	40035231	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	36038941	36038970	30	LOC_Os01g62280
Insertion	Chr12	25804867	25804870	4
Insertion	Chr4	16152276	16152276	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	1477004	8885353	2
Inversion	Chr11	1477317	8873327	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	21189217	Chr4	13727663

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