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Mutant Information

Mutant Name	FN1106-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1106-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 48

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5487189	A-G	HET	INTRON
SBS	Chr1	6790348	T-C	HET	INTERGENIC
SBS	Chr1	16398935	G-T	HET	INTERGENIC
SBS	Chr1	16498624	A-T	HET	UTR_3_PRIME
SBS	Chr1	39306162	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g67620
SBS	Chr1	42672111	T-A	HET	INTERGENIC
SBS	Chr2	3072007	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g06150
SBS	Chr2	7381372	A-T	HET	INTERGENIC
SBS	Chr2	7381373	C-A	HET	INTERGENIC
SBS	Chr2	10096285	C-T	HET	INTERGENIC
SBS	Chr2	28272738	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g46400
SBS	Chr2	31556392	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	620220	C-T	HET	INTERGENIC
SBS	Chr3	7953706	G-A	HET	INTERGENIC
SBS	Chr4	3290752	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g06290
SBS	Chr4	4803068	G-C	HOMO	INTERGENIC
SBS	Chr4	9075708	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g16680
SBS	Chr4	12513454	A-T	HET	INTERGENIC
SBS	Chr4	15520723	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g26600
SBS	Chr4	19298058	C-T	HET	INTERGENIC
SBS	Chr4	24031659	G-A	HET	INTERGENIC
SBS	Chr5	8828461	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g15580
SBS	Chr5	11175726	T-C	HOMO	INTERGENIC
SBS	Chr5	11548585	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g19820
SBS	Chr5	12411151	G-T	HET	INTERGENIC
SBS	Chr5	21825355	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g37300
SBS	Chr5	27520478	G-A	HET	INTERGENIC
SBS	Chr6	14459991	C-T	HET	INTERGENIC
SBS	Chr6	15216255	C-G	HOMO	INTERGENIC
SBS	Chr6	17579168	C-T	HET	INTERGENIC
SBS	Chr6	20945408	G-A	HOMO	INTERGENIC
SBS	Chr7	8658695	T-C	HET	INTERGENIC
SBS	Chr7	8801286	G-T	HET	INTERGENIC
SBS	Chr7	24698522	A-T	HET	INTERGENIC
SBS	Chr7	27081901	A-C	HET	INTRON
SBS	Chr8	17711710	T-G	HOMO	INTERGENIC
SBS	Chr9	6302684	A-G	HET	INTERGENIC
SBS	Chr9	13367902	C-A	HOMO	INTERGENIC
SBS	Chr10	7033472	G-A	HET	INTERGENIC
SBS	Chr10	13112597	A-C	HET	INTERGENIC
SBS	Chr10	13853879	G-A	HET	INTERGENIC
SBS	Chr10	14860182	G-A	HET	INTRON
SBS	Chr11	14878371	T-A	HET	INTERGENIC
SBS	Chr11	15061272	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26300
SBS	Chr11	16590681	T-A	HET	INTRON
SBS	Chr11	16591884	G-A	HET	INTRON
SBS	Chr12	3948953	A-T	HET	INTRON
SBS	Chr12	21373978	G-T	HET	INTERGENIC

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	598591	598592	1
Deletion	Chr1	1760151	1760201	50	LOC_Os01g04050
Deletion	Chr12	2362574	2362579	5
Deletion	Chr11	4120495	4120499	4
Deletion	Chr11	5151276	5151277	1
Deletion	Chr3	5357473	5357478	5
Deletion	Chr10	6177454	6177458	4
Deletion	Chr2	6202615	6202630	15	LOC_Os02g11960
Deletion	Chr7	6594323	6595972	1649
Deletion	Chr1	6854248	6854264	16
Deletion	Chr12	7367454	7367490	36
Deletion	Chr11	7583505	7583506	1
Deletion	Chr9	8870001	9326000	456000	43
Deletion	Chr3	9160725	9160726	1
Deletion	Chr4	10354834	10354835	1
Deletion	Chr10	12767145	12767153	8
Deletion	Chr2	14482264	14482265	1
Deletion	Chr5	15037893	15037898	5	LOC_Os05g25830
Deletion	Chr7	15191665	15191676	11
Deletion	Chr11	16010001	16175000	165000	29
Deletion	Chr11	16184001	16339000	155000	21
Deletion	Chr12	16656479	16656502	23
Deletion	Chr5	17609261	17609266	5
Deletion	Chr6	17679383	17679387	4
Deletion	Chr8	17705622	17705628	6
Deletion	Chr2	20237176	20237178	2
Deletion	Chr11	22336491	22336503	12
Deletion	Chr3	22610407	22610408	1
Deletion	Chr12	24252009	24252010	1	LOC_Os12g39420
Deletion	Chr12	25110500	25110515	15
Deletion	Chr8	25505150	25505151	1
Deletion	Chr7	26025339	26025345	6
Deletion	Chr7	26084330	26084359	29
Deletion	Chr2	32704061	32704063	2	LOC_Os02g53450
Deletion	Chr1	37349333	37349334	1

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	27647359	27647360	2
Insertion	Chr5	6202387	6202388	2
Insertion	Chr1	11768578	11768579	2
Insertion	Chr8	5657557	5657560	4
Insertion	Chr10	2824553	2824553	1

No Inversion

No Translocation

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