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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2665738	C-A	HOMO	INTRON
SBS	Chr1	43226685	C-G	HET	SYNONYMOUS_CODING
SBS	Chr1	4876587	C-T	HET	INTERGENIC
SBS	Chr10	19269345	T-C	HOMO	INTERGENIC
SBS	Chr10	21239312	C-A	HET	INTERGENIC
SBS	Chr10	4399647	C-G	HET	INTERGENIC
SBS	Chr10	7666346	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g14120
SBS	Chr11	10974473	A-G	HET	INTRON
SBS	Chr11	22164668	A-G	HET	INTRON
SBS	Chr12	2899330	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g06150
SBS	Chr12	842859	A-T	HET	INTERGENIC
SBS	Chr2	12361693	C-T	HET	INTRON
SBS	Chr2	22631289	C-T	HET	INTERGENIC
SBS	Chr2	24888028	A-C	HET	INTERGENIC
SBS	Chr2	26133126	G-C	HOMO	INTERGENIC
SBS	Chr3	12061398	A-T	HET	INTERGENIC
SBS	Chr3	24236700	C-T	HET	INTERGENIC
SBS	Chr3	28175439	C-G	HET	INTERGENIC
SBS	Chr3	28919620	C-T	HET	INTERGENIC
SBS	Chr3	31090426	C-T	HET	INTERGENIC
SBS	Chr3	33010649	C-G	HET	INTERGENIC
SBS	Chr3	33945299	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g59620
SBS	Chr3	5979680	G-A	HOMO	UTR_5_PRIME
SBS	Chr3	5979681	G-A	HOMO	UTR_5_PRIME
SBS	Chr4	10990039	G-T	HET	INTRON
SBS	Chr4	10995900	A-G	HET	INTERGENIC
SBS	Chr4	19966157	T-C	HET	INTERGENIC
SBS	Chr4	29288240	A-T	HET	INTERGENIC
SBS	Chr4	33076538	G-A	HET	INTERGENIC
SBS	Chr4	35397486	G-A	HET	INTERGENIC
SBS	Chr4	8199829	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os04g14620
SBS	Chr4	8622509	T-C	HET	INTRON
SBS	Chr5	22411249	A-T	HET	INTRON
SBS	Chr6	28503138	C-A	HOMO	INTERGENIC
SBS	Chr7	23547471	A-G	HET	INTERGENIC
SBS	Chr7	6543809	A-G	HOMO	INTERGENIC
SBS	Chr8	3653379	G-A	HET	INTERGENIC
SBS	Chr8	7301308	A-T	HET	INTERGENIC
SBS	Chr9	4188248	A-G	HET	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	3985678	3985681	3
Deletion	Chr3	7233881	7233883	2
Deletion	Chr7	8893096	8893097	1
Deletion	Chr10	9225801	9225807	6
Deletion	Chr8	9913868	9913895	27	LOC_Os08g16250
Deletion	Chr11	10314001	10871000	557000	71
Deletion	Chr3	11637175	11637176	1
Deletion	Chr5	11841265	11841266	1
Deletion	Chr3	12596749	12596771	22
Deletion	Chr3	17159076	17159092	16
Deletion	Chr11	18345098	18345106	8
Deletion	Chr9	19172296	19172529	233
Deletion	Chr4	19636949	19636951	2
Deletion	Chr5	21541024	21541044	20	LOC_Os05g36400
Deletion	Chr3	23379597	23379613	16
Deletion	Chr7	24144354	24144355	1
Deletion	Chr11	26941555	26941558	3	LOC_Os11g44560
Deletion	Chr11	28875452	28875454	2
Deletion	Chr2	29477748	29477750	2
Deletion	Chr1	33867785	33867792	7
Deletion	Chr1	40567361	40567365	4	LOC_Os01g70100

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	10236211	10236214	4
Insertion	Chr5	21733186	21733186	1
Insertion	Chr6	10369851	10369852	2
Insertion	Chr7	19580061	19580062	2
Insertion	Chr8	16212030	16212031	2
Insertion	Chr9	19655857	19655858	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	3347016	12253330	2
Inversion	Chr12	3347032	12251360	2
Inversion	Chr3	18792257	19356000	LOC_Os03g32850

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6927468	Chr7	19968670	LOC_Os11g12410
Translocation	Chr4	8207170	Chr1	9301909	LOC_Os04g14640
Translocation	Chr4	8208247	Chr1	9295846	LOC_Os01g16370
Translocation	Chr11	10313341	Chr9	18370252
Translocation	Chr11	10313531	Chr9	18370321	LOC_Os11g18300
Translocation	Chr9	19172304	Chr5	1977463	LOC_Os05g04340
Translocation	Chr9	19172525	Chr5	1977461	LOC_Os05g04340
Translocation	Chr9	20004441	Chr4	8207155	2

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