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Mutant Information

Mutant Name	FN1153-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1153-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14420650	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g25450
SBS	Chr1	31099171	C-T	HET	INTERGENIC
SBS	Chr2	15996228	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g27180
SBS	Chr2	27791562	C-T	HOMO	INTRON
SBS	Chr3	7503797	G-T	HET	UTR_5_PRIME
SBS	Chr4	13696780	C-T	HET	INTERGENIC
SBS	Chr4	13722871	C-T	HET	INTERGENIC
SBS	Chr4	21252877	G-T	HET	INTERGENIC
SBS	Chr4	21985581	C-A	HOMO	INTERGENIC
SBS	Chr5	18484684	A-G	HOMO	INTERGENIC
SBS	Chr5	21496929	G-C	HOMO	INTERGENIC
SBS	Chr6	8791176	A-G	HET	INTERGENIC
SBS	Chr6	14631535	G-A	HET	INTERGENIC
SBS	Chr6	16917794	T-A	HET	INTERGENIC
SBS	Chr6	29328992	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g48480
SBS	Chr7	10127043	T-A	HET	INTERGENIC
SBS	Chr7	13172636	A-T	HET	INTERGENIC
SBS	Chr7	13991280	T-C	HET	INTERGENIC
SBS	Chr7	15976466	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g27420
SBS	Chr7	23398386	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g39020
SBS	Chr8	5194750	G-A	HET	INTERGENIC
SBS	Chr8	8754422	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g14560
SBS	Chr8	8827404	C-T	HET	INTRON
SBS	Chr8	13325049	G-A	HET	INTERGENIC
SBS	Chr8	26759242	A-G	HOMO	INTERGENIC
SBS	Chr9	4886633	G-C	HET	INTRON
SBS	Chr9	19868527	T-A	HET	SYNONYMOUS_CODING
SBS	Chr11	21036582	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g35840
SBS	Chr12	1702742	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g04050
SBS	Chr12	7350708	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g13190
SBS	Chr12	25613912	G-A	HOMO	SYNONYMOUS_CODING

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1659793	1659804	11	LOC_Os11g04104
Deletion	Chr8	3457266	3457267	1
Deletion	Chr12	4093465	4093477	12
Deletion	Chr2	7173544	7173549	5	LOC_Os02g13430
Deletion	Chr6	8378787	8378789	2
Deletion	Chr11	12947001	13274000	327000	52
Deletion	Chr9	14103450	14103451	1	LOC_Os09g23725
Deletion	Chr1	14966603	14966610	7	LOC_Os01g26390
Deletion	Chr10	20428440	20428447	7	LOC_Os10g38120
Deletion	Chr6	20881938	20881942	4
Deletion	Chr9	21816652	21816680	28
Deletion	Chr12	22223019	22223027	8
Deletion	Chr3	24684911	24684912	1
Deletion	Chr11	26085190	26085191	1
Deletion	Chr3	27555001	27597000	42000	5
Deletion	Chr5	28744736	28744738	2
Deletion	Chr3	30666965	30666973	8	LOC_Os03g53480
Deletion	Chr3	31887788	31887789	1
Deletion	Chr1	40529413	40529430	17
Deletion	Chr1	42397618	42397638	20

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	14275371	14275372	2
Insertion	Chr2	32844741	32844741	1
Insertion	Chr8	20131861	20131862	2

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	1631173	Chr11	10418280	LOC_Os12g03940
Translocation	Chr4	20220072	Chr1	40377397

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