Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21857278	G-A	HET	INTERGENIC
SBS	Chr1	33222619	G-A	HET	INTRON
SBS	Chr10	6609686	C-T	HET	INTERGENIC
SBS	Chr10	7014804	G-T	HET	INTERGENIC
SBS	Chr10	758659	A-T	HET	INTERGENIC
SBS	Chr10	9051233	G-C	HET	INTRON
SBS	Chr11	21306744	T-C	HET	INTERGENIC
SBS	Chr11	27017553	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g44680
SBS	Chr11	27187255	C-T	HET	INTERGENIC
SBS	Chr11	7969526	G-A	HOMO	INTERGENIC
SBS	Chr11	8298894	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g14720
SBS	Chr12	25350034	T-A	HET	INTERGENIC
SBS	Chr2	11849995	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g20110
SBS	Chr2	16260378	G-A	HET	INTRON
SBS	Chr2	35173125	A-T	HET	START_GAINED	LOC_Os02g57400
SBS	Chr3	10736416	G-T	HOMO	INTERGENIC
SBS	Chr3	1187642	G-A	HET	INTERGENIC
SBS	Chr3	34729816	G-A	HOMO	INTRON
SBS	Chr5	25392827	C-T	HET	INTERGENIC
SBS	Chr5	25633456	C-T	HET	INTRON
SBS	Chr6	13063112	T-A	HET	INTERGENIC
SBS	Chr6	13063113	G-A	HET	INTERGENIC
SBS	Chr6	21121132	G-A	HOMO	INTERGENIC
SBS	Chr6	8776654	G-T	HET	SYNONYMOUS_CODING
SBS	Chr7	10783516	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g18190
SBS	Chr7	27455936	T-A	HOMO	INTERGENIC
SBS	Chr7	27455940	G-A	HOMO	INTERGENIC
SBS	Chr9	12153104	C-A	HET	INTERGENIC
SBS	Chr9	16116029	T-C	HET	INTERGENIC
SBS	Chr9	21872978	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g37930

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	539736	539760	24
Deletion	Chr6	1268401	1268409	8	LOC_Os06g03320
Deletion	Chr10	1848954	1848981	27	LOC_Os10g04040
Deletion	Chr2	1960987	1960996	9
Deletion	Chr2	4446610	4446611	1
Deletion	Chr4	4720237	4720242	5	LOC_Os04g08690
Deletion	Chr7	6748001	6924000	176000	22
Deletion	Chr2	8817832	8817841	9
Deletion	Chr7	10018475	10018476	1
Deletion	Chr8	12066032	12089779	23747	5
Deletion	Chr8	12821161	12821166	5
Deletion	Chr10	12926334	12926335	1
Deletion	Chr8	13415200	13431207	16007	3
Deletion	Chr12	14328200	14328206	6
Deletion	Chr9	15264604	15264605	1
Deletion	Chr1	15511319	15511321	2
Deletion	Chr8	16173469	16173475	6
Deletion	Chr6	16403693	16403700	7
Deletion	Chr3	16685350	16685352	2
Deletion	Chr10	17314146	17314147	1	LOC_Os10g33040
Deletion	Chr11	19180001	19265000	85000	15
Deletion	Chr4	20290460	20290461	1
Deletion	Chr11	21864624	21864631	7
Deletion	Chr12	22158148	22158149	1
Deletion	Chr3	23588649	23588650	1
Deletion	Chr1	26815595	26815607	12
Deletion	Chr3	28647563	28647571	8
Deletion	Chr4	29561386	29561393	7
Deletion	Chr4	30535984	30535987	3	LOC_Os04g51540
Deletion	Chr2	35352647	35352651	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	13664413	13664413	1
Insertion	Chr3	36309216	36309217	2
Insertion	Chr6	23644970	23644990	21

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	12066037	15097680
Inversion	Chr8	12089776	15097671	LOC_Os08g20170

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	10351887	Chr8	12156950
Translocation	Chr11	10733860	Chr2	32133705	2
Translocation	Chr9	14001743	Chr8	13431244	2
Translocation	Chr11	15585617	Chr2	32134540	2

Main menu