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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19095241	T-C	HET	INTERGENIC
SBS	Chr1	21709566	A-T	HET	INTERGENIC
SBS	Chr1	21709567	C-T	HET	INTERGENIC
SBS	Chr1	7469998	A-G	HET	INTERGENIC
SBS	Chr10	17752166	G-T	HET	INTRON
SBS	Chr10	3574721	T-A	HET	INTERGENIC
SBS	Chr11	25437102	T-C	HET	INTERGENIC
SBS	Chr11	5941325	G-A	HET	INTERGENIC
SBS	Chr12	11650749	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os12g20030
SBS	Chr12	15223532	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g26140
SBS	Chr2	14345632	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g24730
SBS	Chr2	19745141	C-A	HET	INTERGENIC
SBS	Chr2	22255594	A-T	HET	INTERGENIC
SBS	Chr2	28074908	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g46070
SBS	Chr2	659588	C-T	HET	INTERGENIC
SBS	Chr3	36121188	A-T	HOMO	INTRON
SBS	Chr4	18071945	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g30270
SBS	Chr4	31844194	G-A	HOMO	INTRON
SBS	Chr4	33445058	A-G	HOMO	INTERGENIC
SBS	Chr4	7301078	T-C	HOMO	INTERGENIC
SBS	Chr5	27022138	T-A	HET	INTERGENIC
SBS	Chr5	2900965	A-G	HOMO	INTERGENIC
SBS	Chr6	10650284	G-A	HET	INTRON
SBS	Chr6	30770403	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g50850
SBS	Chr6	6248225	C-T	HET	INTERGENIC
SBS	Chr6	6350872	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g11920
SBS	Chr7	29572152	C-A	HET	INTERGENIC
SBS	Chr8	10194980	A-T	HOMO	INTERGENIC
SBS	Chr8	12294015	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g20486
SBS	Chr8	22337643	A-T	HET	INTERGENIC
SBS	Chr8	27624684	T-C	HET	INTERGENIC
SBS	Chr8	27900836	C-T	HET	INTRON
SBS	Chr9	16038415	G-A	HOMO	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	540001	1206000	666000	124
Deletion	Chr3	2629234	2629239	5
Deletion	Chr2	5557544	5557546	2
Deletion	Chr6	5687541	5687548	7
Deletion	Chr11	6460383	6460384	1
Deletion	Chr6	6532043	6532048	5
Deletion	Chr8	10699285	10699292	7	LOC_Os08g17470
Deletion	Chr2	12857534	12857539	5
Deletion	Chr12	13233323	13233340	17
Deletion	Chr2	14811820	14811827	7
Deletion	Chr10	18151795	18151800	5
Deletion	Chr8	19995140	19995141	1
Deletion	Chr5	21123335	21123343	8
Deletion	Chr7	22375945	22375948	3
Deletion	Chr5	24010764	24010781	17
Deletion	Chr7	26496646	26496662	16
Deletion	Chr5	26825473	26825500	27
Deletion	Chr8	28206687	28206708	21
Deletion	Chr1	28881601	28881603	2	LOC_Os01g50310
Deletion	Chr1	29364110	29364111	1
Deletion	Chr2	35885397	35885399	2	LOC_Os02g58730
Deletion	Chr1	41776204	41776205	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	13912052	13912054	3
Insertion	Chr5	6514541	6514541	1
Insertion	Chr5	8610327	8610327	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	530948	539368
Inversion	Chr11	530960	1205773	LOC_Os11g03270
Inversion	Chr1	19401515	21843892	2

No Translocation

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