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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13953937	C-T	HOMO	INTERGENIC
SBS	Chr11	13086926	G-A	HET	INTERGENIC
SBS	Chr11	13137422	C-A	HET	INTRON
SBS	Chr11	13726286	T-A	HET	INTERGENIC
SBS	Chr11	17139796	C-A	HET	INTRON
SBS	Chr11	3337290	A-T	HOMO	INTRON
SBS	Chr11	8766256	C-G	HET	INTERGENIC
SBS	Chr12	11684171	G-A	HET	INTERGENIC
SBS	Chr12	3986361	C-T	HET	UTR_5_PRIME
SBS	Chr2	4756866	T-A	HET	INTERGENIC
SBS	Chr3	18764499	C-A	HOMO	INTERGENIC
SBS	Chr3	25285566	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g44830
SBS	Chr3	26265224	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g46440
SBS	Chr3	2834823	A-G	HET	INTRON
SBS	Chr3	9056727	C-A	HET	INTERGENIC
SBS	Chr3	9957297	C-T	HOMO	INTERGENIC
SBS	Chr5	1078217	T-A	HOMO	INTERGENIC
SBS	Chr5	13087256	G-T	HOMO	INTERGENIC
SBS	Chr5	4389140	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g08060
SBS	Chr5	6064935	T-G	HOMO	INTERGENIC
SBS	Chr6	15066808	A-G	HOMO	INTRON
SBS	Chr6	20784401	T-C	HET	UTR_3_PRIME
SBS	Chr6	3171910	G-A	HOMO	INTERGENIC
SBS	Chr7	1065828	A-G	HET	INTERGENIC
SBS	Chr7	11121914	T-A	HOMO	INTRON
SBS	Chr7	22155003	G-A	HET	INTERGENIC
SBS	Chr8	3282500	T-G	HET	STOP_GAINED	LOC_Os08g06010
SBS	Chr9	1087288	T-G	HOMO	INTERGENIC
SBS	Chr9	12081052	T-C	HET	INTRON
SBS	Chr9	15819126	C-T	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	3997041	3997060	19
Deletion	Chr11	4110192	4110193	1	LOC_Os11g07940
Deletion	Chr5	6777149	6777160	11
Deletion	Chr5	7136637	7136641	4
Deletion	Chr9	9989662	9989671	9
Deletion	Chr2	11635362	11635376	14
Deletion	Chr9	11975411	11975413	2
Deletion	Chr2	12995011	12998822	3811	LOC_Os02g21850
Deletion	Chr8	15785001	15848000	63000	10
Deletion	Chr11	16139945	16139948	3
Deletion	Chr10	16319625	16319628	3
Deletion	Chr1	17514987	17514991	4
Deletion	Chr6	17549183	17549184	1
Deletion	Chr5	20042349	20042350	1
Deletion	Chr2	21073373	21073375	2
Deletion	Chr1	21438040	21438058	18
Deletion	Chr1	21446001	21864000	418000	63
Deletion	Chr5	21993422	21993427	5	LOC_Os05g37590
Deletion	Chr12	22178737	22178738	1
Deletion	Chr5	24763259	24763268	9
Deletion	Chr12	26887886	26887901	15
Deletion	Chr6	27995526	27995541	15
Deletion	Chr2	28013466	28013477	11	LOC_Os02g45974
Deletion	Chr2	31969685	31969692	7	LOC_Os02g52210
Deletion	Chr1	40087581	40087583	2

Insertions: 5

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	3179198	3179198	1	LOC_Os01g06720
Insertion	Chr1	3341686	3341687	2
Insertion	Chr11	23208034	23208036	3
Insertion	Chr12	9585983	9585984	2
Insertion	Chr4	20326665	20326665	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	5768499	6015961	LOC_Os03g11590
Inversion	Chr3	5769812	6015964	LOC_Os03g11590

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4746038	Chr9	13582993
Translocation	Chr8	9661111	Chr5	4928417

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