Search Nipponbare

Mutant Information

Mutant Name	FN1206-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1206-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Low (Between 25% and 74%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16606668	G-A	HET	INTERGENIC
SBS	Chr1	21765505	G-A	HET	INTERGENIC
SBS	Chr1	38720334	C-T	HET	INTERGENIC
SBS	Chr1	43081306	C-A	HOMO	INTERGENIC
SBS	Chr10	7656358	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g14070
SBS	Chr2	17764226	A-C	HET	INTRON
SBS	Chr3	23416423	G-A	HOMO	INTERGENIC
SBS	Chr3	26720599	T-A	HET	INTERGENIC
SBS	Chr4	14682344	G-A	HET	INTERGENIC
SBS	Chr4	2289633	G-A	HOMO	INTERGENIC
SBS	Chr4	30040177	G-A	HET	INTERGENIC
SBS	Chr5	11483208	G-T	HOMO	INTERGENIC
SBS	Chr5	18899268	C-T	HET	INTRON
SBS	Chr5	19113351	C-T	HOMO	INTERGENIC
SBS	Chr5	7316176	A-T	HET	INTERGENIC
SBS	Chr6	22034754	C-T	HET	INTERGENIC
SBS	Chr7	10009156	T-C	HET	INTERGENIC
SBS	Chr8	12392977	C-T	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	2303851	2303860	9
Deletion	Chr7	2935845	2935910	65
Deletion	Chr7	4419396	4419398	2
Deletion	Chr5	6644509	6644512	3
Deletion	Chr2	15721186	15721187	1
Deletion	Chr2	15823980	15823985	5	LOC_Os02g26940
Deletion	Chr1	17484869	17484870	1
Deletion	Chr1	19437001	19483000	46000	8
Deletion	Chr1	19494001	19556000	62000	11
Deletion	Chr1	19569001	19649000	80000	14
Deletion	Chr8	19995140	19995141	1
Deletion	Chr9	20379507	20379519	12	LOC_Os09g34985
Deletion	Chr1	21904398	21904400	2
Deletion	Chr4	22086859	22086877	18
Deletion	Chr2	25142195	25142200	5
Deletion	Chr2	25915485	25915490	5
Deletion	Chr1	26069491	26069493	2
Deletion	Chr5	26746029	26746030	1
Deletion	Chr7	29366494	29366496	2
Deletion	Chr1	31371917	31372109	192	LOC_Os01g54550
Deletion	Chr3	34202617	34202623	6	LOC_Os03g60150
Deletion	Chr1	35618295	35618302	7
Deletion	Chr1	36755001	36818000	63000	6
Deletion	Chr1	41525016	41525017	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	11928195	11928195	1
Insertion	Chr10	1742093	1742096	4
Insertion	Chr11	23208034	23208036	3
Insertion	Chr2	18453732	18453739	8
Insertion	Chr2	8950121	8950122	2
Insertion	Chr3	459719	459719	1
Insertion	Chr3	6069963	6069963	1
Insertion	Chr6	700093	700094	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	36510285	36755453

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	14517220	Chr1	12839256	2
Translocation	Chr9	15196259	Chr1	31372150	LOC_Os01g54550

Main menu