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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11729999	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g21010
SBS	Chr1	13772892	T-G	HET	INTERGENIC
SBS	Chr1	953327	C-T	HET	INTERGENIC
SBS	Chr10	20016392	G-A	HET	SYNONYMOUS_CODING
SBS	Chr11	12148860	C-T	HOMO	INTERGENIC
SBS	Chr11	16853855	C-T	HOMO	INTERGENIC
SBS	Chr11	4108543	C-T	HET	INTRON
SBS	Chr11	4388881	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g08330
SBS	Chr12	16250365	G-C	HET	INTRON
SBS	Chr12	18024343	A-G	HET	INTERGENIC
SBS	Chr2	12808027	A-G	HET	INTERGENIC
SBS	Chr2	17295538	C-T	HET	INTRON
SBS	Chr2	27548605	T-C	HET	START_GAINED	LOC_Os02g45320
SBS	Chr3	31080693	G-T	HET	INTERGENIC
SBS	Chr3	33857723	A-G	HET	INTERGENIC
SBS	Chr3	34352986	G-A	HET	INTERGENIC
SBS	Chr3	9926537	G-A	HET	INTERGENIC
SBS	Chr4	12494931	G-C	HET	INTERGENIC
SBS	Chr5	16365391	G-A	HET	INTERGENIC
SBS	Chr5	4299332	G-A	HET	INTERGENIC
SBS	Chr6	12672722	C-T	HOMO	INTERGENIC
SBS	Chr6	15071260	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g25800
SBS	Chr6	15071261	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g25800
SBS	Chr6	17652576	T-A	HOMO	INTERGENIC
SBS	Chr7	14332266	C-G	HOMO	INTERGENIC
SBS	Chr9	13805119	C-G	HOMO	INTRON
SBS	Chr9	2535323	G-A	HET	INTERGENIC
SBS	Chr9	3019723	G-A	HET	INTERGENIC
SBS	Chr9	4140642	G-A	HET	INTERGENIC
SBS	Chr9	7847293	C-T	HET	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	113635	113649	14
Deletion	Chr9	2516780	2516788	8	LOC_Os09g04730
Deletion	Chr2	3201154	3201158	4
Deletion	Chr11	4399466	4399467	1
Deletion	Chr1	6608811	6608815	4
Deletion	Chr8	7040061	7040066	5
Deletion	Chr6	7055864	7055865	1	LOC_Os06g12882
Deletion	Chr6	8113624	8113757	133
Deletion	Chr10	8238878	8238889	11
Deletion	Chr6	8365879	8365882	3
Deletion	Chr3	9492816	9492832	16
Deletion	Chr9	10473083	10473084	1
Deletion	Chr12	11182506	11190997	8491	LOC_Os12g19290
Deletion	Chr4	12127260	12127262	2	LOC_Os04g21450
Deletion	Chr12	13232886	13232893	7
Deletion	Chr10	13282262	13282263	1
Deletion	Chr5	13864041	13864048	7
Deletion	Chr4	15293001	15550000	257000	40
Deletion	Chr3	15513406	15513417	11
Deletion	Chr4	15628001	16074000	446000	36
Deletion	Chr6	15744991	15744992	1
Deletion	Chr2	16112299	16112321	22	LOC_Os02g27350
Deletion	Chr3	16644001	16964000	320000	39
Deletion	Chr11	17123999	17124004	5
Deletion	Chr8	17818068	17818069	1
Deletion	Chr8	18110407	18110412	5
Deletion	Chr8	19871555	19871573	18	LOC_Os08g32050
Deletion	Chr9	20463537	20463539	2
Deletion	Chr10	21168309	21168311	2
Deletion	Chr6	22821447	22821459	12	LOC_Os06g38510
Deletion	Chr1	24147855	24147864	9
Deletion	Chr1	24873493	24873495	2

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	17838567	17838570	4
Insertion	Chr11	27829340	27829340	1
Insertion	Chr2	24235268	24235278	11
Insertion	Chr2	29706893	29706894	2
Insertion	Chr4	25353917	25353917	1	LOC_Os04g42840
Insertion	Chr6	5232124	5232124	1

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	13445929	Chr4	15938573	LOC_Os05g23500

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