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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15873160	G-A	HOMO	INTERGENIC
SBS	Chr1	27064524	A-G	HET	INTERGENIC
SBS	Chr10	12127743	G-C	HET	INTERGENIC
SBS	Chr10	13101687	A-T	HOMO	INTERGENIC
SBS	Chr10	20102496	G-T	HET	INTERGENIC
SBS	Chr10	22812170	G-A	HET	INTERGENIC
SBS	Chr10	6211157	A-G	HET	INTRON
SBS	Chr10	82899	G-A	HOMO	INTERGENIC
SBS	Chr10	90655	A-G	HOMO	INTERGENIC
SBS	Chr11	10293464	G-A	HET	INTRON
SBS	Chr11	11679980	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g20220
SBS	Chr11	16034828	C-T	HET	INTERGENIC
SBS	Chr11	8257313	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os11g14650
SBS	Chr12	13220302	G-A	HET	STOP_GAINED	LOC_Os12g23360
SBS	Chr12	1350689	G-T	HET	INTERGENIC
SBS	Chr12	1350694	A-C	HET	INTERGENIC
SBS	Chr12	17353260	A-T	HET	INTERGENIC
SBS	Chr3	12773949	T-C	HET	INTERGENIC
SBS	Chr4	10363423	A-C	HET	INTRON
SBS	Chr4	15076645	T-A	HOMO	INTERGENIC
SBS	Chr4	21689251	A-G	HET	INTERGENIC
SBS	Chr4	3021364	A-T	HET	INTERGENIC
SBS	Chr5	12968172	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g22850
SBS	Chr5	14965592	C-T	HET	INTERGENIC
SBS	Chr5	14965593	C-T	HET	INTERGENIC
SBS	Chr5	26904105	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	8717667	A-T	HET	INTERGENIC
SBS	Chr6	12263672	C-A	HET	INTERGENIC
SBS	Chr6	1321357	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g03450
SBS	Chr6	16038474	C-T	HET	INTERGENIC
SBS	Chr6	29717888	G-A	HOMO	INTERGENIC
SBS	Chr6	7163284	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr7	23803932	T-G	HET	INTERGENIC
SBS	Chr7	28887714	G-T	HET	INTERGENIC
SBS	Chr7	29181488	T-A	HET	UTR_3_PRIME
SBS	Chr8	16766788	G-C	HOMO	INTERGENIC
SBS	Chr8	17460443	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g28590
SBS	Chr8	18562690	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g30200

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	186967	186973	6
Deletion	Chr1	338922	338926	4
Deletion	Chr1	506020	506025	5	LOC_Os01g01920
Deletion	Chr12	4425387	4425394	7
Deletion	Chr11	8672349	8672352	3
Deletion	Chr9	8836778	8836783	5
Deletion	Chr9	9061510	9061511	1
Deletion	Chr5	9096861	10344050	1247189	181
Deletion	Chr8	11237246	11237247	1
Deletion	Chr6	12203800	12203801	1
Deletion	Chr11	12728550	12728558	8
Deletion	Chr5	13947001	14153000	206000	36
Deletion	Chr6	16238779	16238786	7
Deletion	Chr5	16287221	16287222	1
Deletion	Chr8	17049350	17049357	7	LOC_Os08g27980
Deletion	Chr12	17338389	17338393	4
Deletion	Chr10	17576219	17576221	2
Deletion	Chr9	17779579	17779589	10
Deletion	Chr10	18069056	18069057	1
Deletion	Chr9	18160538	18173675	13137	2
Deletion	Chr7	22856981	22856982	1
Deletion	Chr7	25476972	25476975	3
Deletion	Chr3	25648583	25649172	589	LOC_Os03g45440
Deletion	Chr5	25916561	25916570	9
Deletion	Chr6	25917019	25917020	1
Deletion	Chr12	26015292	26015293	1
Deletion	Chr3	26017376	26017381	5
Deletion	Chr5	26394143	26394147	4
Deletion	Chr7	27162943	27162974	31	LOC_Os07g45530
Deletion	Chr1	29493753	29494009	256

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	25474794	25474794	1
Insertion	Chr1	2549378	2549399	22
Insertion	Chr11	25797530	25797530	1
Insertion	Chr2	24209244	24209244	1
Insertion	Chr2	26795988	26795988	1
Insertion	Chr3	7620255	7620256	2
Insertion	Chr4	2301652	2301653	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	13946854	14963285	LOC_Os05g25720
Inversion	Chr5	14153059	14963288	2
Inversion	Chr8	17459060	17938751
Inversion	Chr12	24893664	24952412

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	25649125	Chr2	6043437	2

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