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Mutant Information

Mutant Name	FN1230-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1230-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4245967	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g08550
SBS	Chr1	34548031	G-A	HOMO	UTR_3_PRIME
SBS	Chr2	393188	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	1251859	G-T	HET	INTERGENIC
SBS	Chr2	2086172	C-T	HOMO	INTERGENIC
SBS	Chr2	15407073	G-A	HET	INTERGENIC
SBS	Chr2	22514032	G-A	HOMO	INTERGENIC
SBS	Chr3	11486268	G-A	HET	INTERGENIC
SBS	Chr3	19406393	C-T	HET	INTERGENIC
SBS	Chr4	18903393	G-A	HET	INTERGENIC
SBS	Chr5	29806932	C-G	HOMO	INTRON
SBS	Chr6	15880103	G-A	HET	INTERGENIC
SBS	Chr6	30965611	T-A	HET	INTERGENIC
SBS	Chr7	11297459	G-A	HET	INTERGENIC
SBS	Chr7	23902626	A-G	HET	INTERGENIC
SBS	Chr8	24614235	C-A	HOMO	INTERGENIC
SBS	Chr9	1364055	T-C	HET	INTRON
SBS	Chr9	6024155	C-T	HET	INTRON
SBS	Chr9	6868342	A-T	HET	INTERGENIC
SBS	Chr10	19346978	T-G	HET	SPLICE_SITE_REGION
SBS	Chr10	19679615	A-T	HET	INTRON
SBS	Chr10	20108340	G-C	HET	INTERGENIC
SBS	Chr10	21356078	A-G	HET	INTRON
SBS	Chr10	21923160	A-T	HET	INTERGENIC
SBS	Chr11	10667584	G-A	HOMO	STOP_GAINED	LOC_Os11g18790
SBS	Chr12	8487336	A-G	HET	INTRON
SBS	Chr12	10356602	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr12	12114547	C-A	HOMO	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	575033	575035	2
Deletion	Chr8	3886174	3886177	3
Deletion	Chr7	7327849	7327851	2
Deletion	Chr10	9189590	9189591	1
Deletion	Chr12	9750860	9750863	3
Deletion	Chr1	10230658	10230751	93
Deletion	Chr7	10531405	10531416	11	LOC_Os07g17800
Deletion	Chr7	10777885	10777906	21
Deletion	Chr7	11283792	11284011	219
Deletion	Chr3	12363818	12363824	6
Deletion	Chr7	12865963	12865973	10	LOC_Os07g22800
Deletion	Chr3	13174612	13174628	16
Deletion	Chr5	13231066	13231072	6
Deletion	Chr1	15330135	15330213	78
Deletion	Chr3	16381750	16381751	1
Deletion	Chr5	17677478	17677486	8
Deletion	Chr10	21076733	21076735	2
Deletion	Chr1	21565297	21565299	2
Deletion	Chr3	22915793	22915795	2
Deletion	Chr4	23092862	23092886	24
Deletion	Chr1	23324945	23324965	20
Deletion	Chr12	23711664	23711694	30
Deletion	Chr7	24100699	24100704	5

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr6	3260326	3260327	2
Insertion	Chr8	23701256	23701256	1

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1251759	1989960	LOC_Os02g04490
Inversion	Chr2	1331786	2802816	2
Inversion	Chr2	1989965	2802815	2
Inversion	Chr2	6246395	15679895
Inversion	Chr2	6246547	15679907
Inversion	Chr5	25927852	26496214	LOC_Os05g45730
Inversion	Chr6	26165632	26195208	LOC_Os06g43560

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	13220795	Chr5	29713157

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