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Mutant Information

Mutant Name	FN1231-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1231-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr10	14993358	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g28724
SBS	Chr10	2717132	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g05500
SBS	Chr10	2884701	C-G	HET	INTERGENIC
SBS	Chr10	660884	A-G	HET	INTERGENIC
SBS	Chr11	3274872	G-A	HET	INTERGENIC
SBS	Chr11	7512611	G-A	HET	INTRON
SBS	Chr12	15498036	G-T	HET	INTERGENIC
SBS	Chr12	23216663	T-G	HOMO	SYNONYMOUS_CODING
SBS	Chr2	138232	G-A	HET	INTERGENIC
SBS	Chr2	34894144	T-C	HET	INTERGENIC
SBS	Chr2	35202925	T-A	HET	INTERGENIC
SBS	Chr2	9965420	C-G	HET	INTERGENIC
SBS	Chr3	22698006	T-C	HET	INTERGENIC
SBS	Chr3	33997620	A-G	HET	INTRON
SBS	Chr4	13436441	A-C	HET	INTRON
SBS	Chr4	31140245	G-A	HOMO	INTRON
SBS	Chr4	33608480	G-T	HOMO	INTERGENIC
SBS	Chr4	3457779	G-A	HOMO	INTERGENIC
SBS	Chr5	29381450	A-G	HET	UTR_5_PRIME
SBS	Chr6	14883702	G-A	HOMO	INTERGENIC
SBS	Chr7	15436487	A-T	HET	INTERGENIC
SBS	Chr8	11097974	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g18100
SBS	Chr8	15063981	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os08g24880
SBS	Chr8	16951323	C-T	HET	INTRON

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	3290893	3290915	22	LOC_Os07g06740
Deletion	Chr7	4136102	4136111	9
Deletion	Chr7	6574946	6574955	9	LOC_Os07g11870
Deletion	Chr1	8497664	8497676	12
Deletion	Chr1	10456483	10456485	2
Deletion	Chr1	11367034	11367042	8	LOC_Os01g20000
Deletion	Chr6	11925067	11925133	66
Deletion	Chr1	12258001	12297000	39000	5
Deletion	Chr8	14150567	14150583	16
Deletion	Chr4	15373112	15373113	1	LOC_Os04g26350
Deletion	Chr8	15789970	15790035	65
Deletion	Chr3	17272416	17272417	1
Deletion	Chr3	17538731	17538741	10
Deletion	Chr7	22114900	22114906	6
Deletion	Chr3	23912629	23912637	8
Deletion	Chr12	26911328	26911330	2
Deletion	Chr7	27273038	27273053	15	LOC_Os07g45680
Deletion	Chr4	28044204	28044205	1
Deletion	Chr2	29070885	29070887	2	LOC_Os02g47570

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2961170	2961175	6
Insertion	Chr11	13161299	13161299	1	LOC_Os11g22880
Insertion	Chr5	27343565	27343580	16
Insertion	Chr6	26140675	26140677	3

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	2840182	3246465
Inversion	Chr6	10044523	10323116
Inversion	Chr1	11409314	12514532	LOC_Os01g22249
Inversion	Chr1	12229960	12514531	LOC_Os01g22249
Inversion	Chr12	21600329	21600432	LOC_Os12g35520

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3316860	Chr4	16879765	LOC_Os10g06450
Translocation	Chr7	5294353	Chr4	16879808
Translocation	Chr6	5389439	Chr1	27454707	LOC_Os01g47980
Translocation	Chr6	23463389	Chr3	29226755	LOC_Os06g39515
Translocation	Chr7	27759582	Chr6	12296021	LOC_Os06g21260

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