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Mutant Information

Mutant Name	FN1232-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1232-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	17363058	C-G	HET	INTERGENIC
SBS	Chr3	10359504	A-T	HET	INTERGENIC
SBS	Chr3	10413621	G-A	HET	INTERGENIC
SBS	Chr3	11857040	A-T	HET	INTERGENIC
SBS	Chr3	15235661	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g26680
SBS	Chr3	32278343	A-G	HET	INTERGENIC
SBS	Chr3	35107250	C-A	HET	UTR_3_PRIME
SBS	Chr4	232757	T-G	HOMO	INTERGENIC
SBS	Chr4	3107364	C-T	HOMO	INTRON
SBS	Chr4	7157141	C-T	HET	UTR_3_PRIME
SBS	Chr5	22523109	T-C	HET	INTRON
SBS	Chr5	23238291	C-T	HET	INTERGENIC
SBS	Chr5	23345821	C-T	HET	INTERGENIC
SBS	Chr6	21103792	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g36080
SBS	Chr7	21603165	T-C	HOMO	INTERGENIC
SBS	Chr8	608084	C-T	HET	INTERGENIC
SBS	Chr8	9231793	A-G	HET	INTERGENIC
SBS	Chr8	10945256	C-A	HET	INTERGENIC
SBS	Chr9	2946770	C-T	HOMO	STOP_GAINED	LOC_Os09g06280
SBS	Chr9	13299671	C-T	HET	INTERGENIC
SBS	Chr11	220584	C-T	HOMO	INTERGENIC
SBS	Chr11	9925327	T-C	HOMO	INTRON
SBS	Chr12	3866263	G-T	HOMO	INTERGENIC
SBS	Chr12	8769411	G-A	HOMO	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1748209	1748216	7	LOC_Os11g04240
Deletion	Chr2	6244791	6244792	1
Deletion	Chr12	8332861	8332865	4
Deletion	Chr5	14434607	14434615	8
Deletion	Chr1	15073082	15073086	4
Deletion	Chr4	17069331	17069342	11	LOC_Os04g28820
Deletion	Chr6	17344329	17344331	2
Deletion	Chr3	18162770	18162776	6
Deletion	Chr8	19214735	19214736	1
Deletion	Chr1	19401765	19401781	16	LOC_Os01g35050
Deletion	Chr8	20014923	20014930	7
Deletion	Chr2	20681273	20681284	11
Deletion	Chr7	20881565	20881566	1	LOC_Os07g34840
Deletion	Chr2	22684924	22684926	2
Deletion	Chr1	23769952	23769957	5
Deletion	Chr3	35150898	35150902	4	LOC_Os03g62040
Deletion	Chr1	35764023	35764027	4

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	12935273	12935274	2
Insertion	Chr12	16053834	16053842	9
Insertion	Chr6	8418697	8418698	2
Insertion	Chr10	6307580	6307580	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	21308873	21499502
Inversion	Chr2	21308893	21500780

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	2260650	Chr2	22360612	2
Translocation	Chr7	2260658	Chr2	22360249	2

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