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Mutant Information

Mutant Name	FN1233-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1233-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect
SBS	Chr1	37972224	G-T	HOMO	INTERGENIC
SBS	Chr1	38836083	C-A	HET	INTRON
SBS	Chr10	11329347	C-T	HOMO	INTRON
SBS	Chr11	16817242	T-C	HET	INTERGENIC
SBS	Chr11	8688934	C-G	HET	INTERGENIC
SBS	Chr11	9514117	A-T	HET	INTERGENIC
SBS	Chr12	5745956	A-C	HOMO	INTRON
SBS	Chr2	15486459	C-A	HET	INTERGENIC
SBS	Chr2	15573935	C-G	HET	INTERGENIC
SBS	Chr2	34282939	C-T	HET	INTERGENIC
SBS	Chr2	4747972	T-A	HOMO	INTRON
SBS	Chr2	4747973	G-A	HOMO	INTRON
SBS	Chr3	15153931	C-T	HET	INTERGENIC
SBS	Chr3	23593399	A-T	HET	INTERGENIC
SBS	Chr3	31890710	T-G	HET	INTRON
SBS	Chr3	33120640	T-A	HET	INTERGENIC
SBS	Chr4	7137114	C-A	HOMO	INTERGENIC
SBS	Chr5	11718283	G-C	HET	INTERGENIC
SBS	Chr5	15842668	T-G	HET	INTERGENIC
SBS	Chr5	16049004	A-T	HET	INTRON
SBS	Chr5	18808061	A-T	HET	INTERGENIC
SBS	Chr5	2055275	A-C	HOMO	INTRON
SBS	Chr6	11228675	T-C	HET	INTERGENIC
SBS	Chr6	14437403	A-G	HET	INTERGENIC
SBS	Chr7	15395494	A-G	HOMO	INTERGENIC
SBS	Chr7	17073545	T-C	HOMO	INTERGENIC
SBS	Chr7	20510796	C-A	HOMO	INTERGENIC
SBS	Chr7	7805202	G-A	HOMO	INTERGENIC
SBS	Chr9	1706474	C-G	HET	INTERGENIC
SBS	Chr9	17869187	G-T	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	222901	222905	4
Deletion	Chr6	2609726	2609730	4
Deletion	Chr9	6886962	6889935	2973	2
Deletion	Chr3	7341619	7341626	7
Deletion	Chr12	7448325	7448360	35
Deletion	Chr1	8482298	8482299	1
Deletion	Chr6	9147679	9147680	1	LOC_Os06g16070
Deletion	Chr9	12242326	12242327	1	LOC_Os09g20380
Deletion	Chr1	12849091	12849092	1
Deletion	Chr3	14488408	14488409	1
Deletion	Chr4	17630546	17630551	5
Deletion	Chr5	18808064	18808070	6
Deletion	Chr10	21481092	21481104	12
Deletion	Chr9	21537706	21537713	7
Deletion	Chr6	22411410	22411423	13
Deletion	Chr3	22981190	22981202	12
Deletion	Chr11	22999710	22999720	10
Deletion	Chr7	25225789	25225865	76
Deletion	Chr5	27563145	27563149	4
Deletion	Chr8	28136248	28136250	2	LOC_Os08g44780
Deletion	Chr5	28540943	28540951	8	LOC_Os05g49750
Deletion	Chr3	30019427	30019434	7
Deletion	Chr2	34292441	34292444	3
Deletion	Chr1	35918340	35918359	19

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12149114	12149115	2
Insertion	Chr1	32893855	32893855	1
Insertion	Chr1	41396279	41396279	1
Insertion	Chr3	13729963	13729963	1
Insertion	Chr3	21957063	21957063	1
Insertion	Chr3	23671316	23671319	4
Insertion	Chr4	28181186	28181186	1
Insertion	Chr8	24721344	24721345	2

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1078991	1786255

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	3326825	Chr1	24279759	2
Translocation	Chr9	20287708	Chr6	22062275
Translocation	Chr5	23765413	Chr1	24275704

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