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Mutant Information

Mutant Name	FN1241-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1241-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11463713	C-T	HOMO	INTERGENIC
SBS	Chr1	31219482	C-T	HOMO	INTERGENIC
SBS	Chr1	31801672	G-C	HOMO	INTERGENIC
SBS	Chr10	11997553	T-A	HOMO	INTERGENIC
SBS	Chr12	13486085	G-A	HET	INTERGENIC
SBS	Chr12	16666314	A-T	HOMO	INTERGENIC
SBS	Chr2	12484361	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g21060
SBS	Chr2	4314960	T-A	HOMO	INTERGENIC
SBS	Chr2	9453292	T-A	HET	INTERGENIC
SBS	Chr2	9453293	T-A	HET	INTERGENIC
SBS	Chr3	21067238	C-T	HET	INTERGENIC
SBS	Chr3	33608824	T-C	HET	INTRON
SBS	Chr4	13045937	T-A	HET	INTERGENIC
SBS	Chr4	5776616	G-C	HET	INTRON
SBS	Chr4	9991215	C-T	HET	INTERGENIC
SBS	Chr5	14420862	A-T	HET	INTERGENIC
SBS	Chr5	17180044	A-G	HOMO	INTERGENIC
SBS	Chr6	13461593	C-T	HET	INTERGENIC
SBS	Chr6	13461598	G-T	HET	INTERGENIC
SBS	Chr6	9229417	T-C	HET	INTERGENIC
SBS	Chr7	14112237	C-T	HET	INTERGENIC
SBS	Chr7	6656326	T-G	HOMO	INTERGENIC
SBS	Chr8	21935763	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g34860
SBS	Chr8	24318386	G-A	HOMO	INTRON

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1898838	1898871	33
Deletion	Chr10	2025348	2025354	6	LOC_Os10g04290
Deletion	Chr2	4473490	4473606	116
Deletion	Chr4	4820525	4820527	2
Deletion	Chr2	6531332	6531345	13
Deletion	Chr3	9321095	9321096	1
Deletion	Chr12	14887174	14887175	1
Deletion	Chr2	14992685	14992686	1	LOC_Os02g25640
Deletion	Chr4	19928747	19928759	12
Deletion	Chr6	20393180	20393182	2	LOC_Os06g35040
Deletion	Chr10	20557448	20557452	4
Deletion	Chr5	20774299	20774301	2
Deletion	Chr5	21788008	21788012	4
Deletion	Chr7	25766244	25766252	8
Deletion	Chr2	26147369	26147370	1
Deletion	Chr6	26439982	26439989	7
Deletion	Chr3	35899670	35902832	3162	2
Deletion	Chr1	37723676	37723688	12

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	5201898	5201899	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	3084396	3299374	LOC_Os04g06300
Inversion	Chr7	9534175	13488581	2
Inversion	Chr7	9534189	13488585	2
Inversion	Chr3	33620816	34758519	LOC_Os03g61200
Inversion	Chr3	33626689	34758524	LOC_Os03g61200

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	15707080	Chr3	33620841
Translocation	Chr8	15707082	Chr3	33626732
Translocation	Chr8	26760485	Chr5	3971230	LOC_Os05g07450
Translocation	Chr8	26760504	Chr5	3970799

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