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Mutant Information

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8042190	C-G	HET	INTERGENIC
SBS	Chr1	16430260	T-C	HOMO	INTERGENIC
SBS	Chr1	17342919	A-C	HOMO	INTRON
SBS	Chr1	21886022	A-G	HOMO	INTERGENIC
SBS	Chr1	24687641	T-G	HET	INTERGENIC
SBS	Chr1	24986905	G-A	HOMO	INTERGENIC
SBS	Chr1	28962461	C-T	HET	INTERGENIC
SBS	Chr2	2630608	A-G	HET	INTERGENIC
SBS	Chr2	4766307	T-C	HET	INTRON
SBS	Chr2	9838672	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	18110999	G-C	HET	INTRON
SBS	Chr3	43930	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr3	18699629	G-C	HOMO	INTERGENIC
SBS	Chr3	20784967	G-T	HET	INTERGENIC
SBS	Chr3	28811434	A-T	HET	INTERGENIC
SBS	Chr3	28984926	A-G	HET	INTERGENIC
SBS	Chr4	14547660	G-A	HOMO	INTERGENIC
SBS	Chr4	30296832	T-G	HOMO	INTRON
SBS	Chr5	3579783	C-T	HOMO	INTERGENIC
SBS	Chr5	12098129	C-G	HET	INTRON
SBS	Chr5	14502142	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g25060
SBS	Chr6	10191356	G-A	HET	INTERGENIC
SBS	Chr6	10191357	A-T	HET	INTERGENIC
SBS	Chr6	20519318	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	23627902	G-T	HOMO	INTERGENIC
SBS	Chr6	24352439	T-C	HOMO	INTRON
SBS	Chr8	13594604	T-C	HET	INTERGENIC
SBS	Chr8	13611706	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g22620
SBS	Chr9	12843594	T-C	HET	INTERGENIC
SBS	Chr11	829207	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g02620
SBS	Chr11	9799947	T-C	HET	INTRON
SBS	Chr11	11048165	G-T	HOMO	INTRON
SBS	Chr11	14932308	G-C	HOMO	SYNONYMOUS_CODING
SBS	Chr12	11750363	T-A	HET	INTERGENIC
SBS	Chr12	13639739	G-A	HET	INTERGENIC
SBS	Chr12	15572998	C-T	HET	INTERGENIC
SBS	Chr12	16273716	C-A	HET	INTRON

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	2837270	2837272	2
Deletion	Chr10	3236650	3236651	1
Deletion	Chr5	8153396	8153409	13
Deletion	Chr5	9214001	9358000	144000	23
Deletion	Chr11	9746461	9746462	1
Deletion	Chr12	12595498	12595502	4
Deletion	Chr12	14170054	14170055	1	LOC_Os12g24710
Deletion	Chr2	14790173	14790177	4
Deletion	Chr7	15242047	15242055	8
Deletion	Chr9	18916001	18954000	38000	6
Deletion	Chr2	20646403	20646407	4
Deletion	Chr5	22321564	22321565	1
Deletion	Chr2	23148114	23148117	3	LOC_Os02g38280
Deletion	Chr11	23757950	23757951	1
Deletion	Chr1	25516061	25516063	2
Deletion	Chr4	26564849	26564860	11
Deletion	Chr8	27625588	27625590	2
Deletion	Chr1	31643041	31643049	8	LOC_Os01g55040
Deletion	Chr2	32101693	32101717	24
Deletion	Chr2	35185460	35185465	5
Deletion	Chr3	35293412	35293421	9

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	22527025	22527027	3
Insertion	Chr2	30290909	30290911	3	LOC_Os02g49555
Insertion	Chr8	8218128	8218133	6
Insertion	Chr9	17889225	17889226	2

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	7141888	Chr11	13985390
Translocation	Chr11	18689233	Chr1	21797290
Translocation	Chr9	18916458	Chr3	31512355	LOC_Os03g55389

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