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Mutant Information

Mutant Name	FN1247-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1247-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31062037	T-C	HET	INTERGENIC
SBS	Chr2	29574875	T-G	HET	INTERGENIC
SBS	Chr2	30211191	A-G	HET	INTERGENIC
SBS	Chr4	14467688	C-G	HET	INTERGENIC
SBS	Chr4	14467689	G-A	HET	INTERGENIC
SBS	Chr4	22503738	G-A	HET	INTERGENIC
SBS	Chr4	31014536	G-A	HET	INTERGENIC
SBS	Chr5	10420196	C-T	HET	STOP_GAINED	LOC_Os05g18120
SBS	Chr6	8593654	G-A	HOMO	INTERGENIC
SBS	Chr6	24959104	G-T	HET	INTRON
SBS	Chr6	28615911	C-T	HET	INTERGENIC
SBS	Chr6	28615912	A-C	HET	INTERGENIC
SBS	Chr7	29032272	A-G	HET	INTERGENIC
SBS	Chr8	16784705	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g27500
SBS	Chr8	16784960	T-A	HET	INTRON
SBS	Chr8	17117827	T-A	HOMO	INTERGENIC
SBS	Chr9	10163304	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g16560
SBS	Chr9	15242590	G-T	HOMO	INTERGENIC
SBS	Chr10	8023123	G-A	HET	INTERGENIC
SBS	Chr10	20801648	A-T	HET	INTERGENIC

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	5092095	5092113	18
Deletion	Chr1	7477778	7477787	9	LOC_Os01g13430
Deletion	Chr2	8024887	8024891	4
Deletion	Chr9	9216749	9216760	11
Deletion	Chr2	10754758	10754759	1
Deletion	Chr3	11997017	11997020	3
Deletion	Chr4	16733616	16733618	2
Deletion	Chr3	17139021	17139022	1
Deletion	Chr11	18731675	18731698	23
Deletion	Chr3	22371001	22519000	148000	21
Deletion	Chr10	23040190	23040191	1
Deletion	Chr4	33995928	33995950	22

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	26907191	26907192	2
Insertion	Chr2	571607	571608	2
Insertion	Chr9	13061771	13061772	2
Insertion	Chr11	15481156	15481157	2
Insertion	Chr5	23858409	23858412	4
Insertion	Chr3	25930976	25930977	2
Insertion	Chr4	21130579	21130580	2
Insertion	Chr5	5606675	5606676	2
Insertion	Chr8	6507366	6507366	1
Insertion	Chr12	9585983	9585984	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	8591417	8896787	2
Inversion	Chr11	15395309	15440816

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	16294513	Chr3	22370103	LOC_Os03g40250
Translocation	Chr11	19543315	Chr1	15637524
Translocation	Chr11	19557289	Chr3	22371398
Translocation	Chr7	28873038	Chr3	8591409	LOC_Os03g15580
Translocation	Chr7	28873039	Chr3	8896819	LOC_Os03g16130

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