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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18218971	C-T	HET	INTERGENIC
SBS	Chr1	21197418	A-T	HOMO	INTRON
SBS	Chr1	32029300	A-T	HOMO	INTRON
SBS	Chr1	32029301	G-T	HOMO	SPLICE_SITE_REGION
SBS	Chr1	34797091	A-T	HOMO	INTERGENIC
SBS	Chr12	10568836	C-A	HOMO	INTERGENIC
SBS	Chr12	2186867	T-A	HET	INTERGENIC
SBS	Chr12	2186869	C-A	HET	INTERGENIC
SBS	Chr12	7342365	G-A	HOMO	UTR_3_PRIME
SBS	Chr2	1557705	G-T	HOMO	INTERGENIC
SBS	Chr2	29976362	C-A	HOMO	INTERGENIC
SBS	Chr2	31961111	G-A	HOMO	UTR_5_PRIME
SBS	Chr3	22131864	G-A	HOMO	INTERGENIC
SBS	Chr3	29051881	G-C	HET	INTERGENIC
SBS	Chr3	34989154	C-A	HET	INTRON
SBS	Chr4	1205334	C-G	HOMO	INTERGENIC
SBS	Chr4	12881188	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g22720
SBS	Chr5	25856322	C-T	HET	INTERGENIC
SBS	Chr6	17003881	G-A	HET	UTR_3_PRIME
SBS	Chr6	20478660	A-G	HET	INTERGENIC
SBS	Chr6	4233701	T-G	HOMO	INTERGENIC
SBS	Chr7	25676464	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g42885
SBS	Chr7	27361661	G-A	HET	INTERGENIC
SBS	Chr7	671347	A-C	HET	INTERGENIC
SBS	Chr8	16235505	G-T	HET	INTERGENIC
SBS	Chr8	16235506	A-T	HET	INTERGENIC
SBS	Chr8	2659571	G-C	HET	INTRON
SBS	Chr8	3643199	A-C	HET	INTERGENIC
SBS	Chr8	7510371	T-G	HET	UTR_3_PRIME
SBS	Chr9	11294416	C-T	HOMO	INTERGENIC
SBS	Chr9	14073738	C-T	HET	INTERGENIC

Deletions: 23

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	329099	329118	19
Deletion	Chr5	614292	614298	6
Deletion	Chr7	1809465	1809466	1
Deletion	Chr4	3416001	4022000	606000	92
Deletion	Chr10	4053004	4053009	5
Deletion	Chr6	4377935	4377936	1
Deletion	Chr11	7858701	7858711	10
Deletion	Chr7	11897788	11897802	14
Deletion	Chr3	12526906	12526921	15
Deletion	Chr12	12581629	12581630	1
Deletion	Chr4	12769031	12769033	2
Deletion	Chr2	13059098	13059101	3
Deletion	Chr6	13555114	13555117	3	LOC_Os06g23210
Deletion	Chr10	14391829	14391834	5
Deletion	Chr2	14774731	14774744	13	LOC_Os02g25340
Deletion	Chr3	17285583	17285584	1
Deletion	Chr4	17666734	17666735	1
Deletion	Chr12	19893496	19893497	1
Deletion	Chr1	24325444	24325464	20	LOC_Os01g42740
Deletion	Chr5	26300787	26300815	28	LOC_Os05g45340
Deletion	Chr1	26359712	26359725	13
Deletion	Chr5	27945830	27945837	7
Deletion	Chr2	33398410	33407418	9008	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	14144966	14144967	2
Insertion	Chr12	621465	621466	2
Insertion	Chr2	8103302	8103305	4

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	14699771	Chr2	33407456	LOC_Os07g25640
Translocation	Chr7	14699797	Chr2	33407058	LOC_Os07g25640
Translocation	Chr10	17185360	Chr2	7353070	LOC_Os10g32820
Translocation	Chr10	17185531	Chr2	7353071	LOC_Os10g32820

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