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Mutant Information

Mutant Name	FN1251-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1251-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31311517	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g54420
SBS	Chr1	37566180	C-T	HOMO	UTR_5_PRIME
SBS	Chr10	20340670	G-A	HET	SPLICE_SITE_REGION
SBS	Chr10	50859	A-T	HOMO	INTRON
SBS	Chr10	9608324	A-T	HET	INTERGENIC
SBS	Chr12	10175062	T-C	HET	INTERGENIC
SBS	Chr12	16760003	C-A	HET	INTERGENIC
SBS	Chr12	18175144	C-G	HET	INTERGENIC
SBS	Chr12	26736800	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	21884577	G-A	HET	INTERGENIC
SBS	Chr3	27991797	A-C	HOMO	INTERGENIC
SBS	Chr5	26939826	T-C	HOMO	INTERGENIC
SBS	Chr5	681177	T-A	HET	INTERGENIC
SBS	Chr6	1718099	A-G	HOMO	INTERGENIC
SBS	Chr6	7337531	G-T	HET	INTERGENIC
SBS	Chr7	2786099	T-C	HET	INTERGENIC
SBS	Chr7	28532432	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g47750
SBS	Chr7	28532433	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os07g47750
SBS	Chr7	8486201	G-A	HET	INTERGENIC
SBS	Chr8	10230804	G-A	HET	INTERGENIC
SBS	Chr8	11104408	A-G	HET	INTRON
SBS	Chr8	11499787	C-T	HET	INTRON
SBS	Chr8	26856065	C-T	HET	INTERGENIC
SBS	Chr9	7172869	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g12510

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	808327	808329	2
Deletion	Chr1	2560793	2560800	7
Deletion	Chr12	2878833	2878836	3
Deletion	Chr8	4285134	4285142	8
Deletion	Chr5	5614929	5614937	8
Deletion	Chr7	5834043	5834273	230
Deletion	Chr9	6090089	6090097	8
Deletion	Chr3	6418773	6418778	5
Deletion	Chr11	8428675	8428688	13
Deletion	Chr3	10798497	10798503	6
Deletion	Chr3	14008486	14008491	5
Deletion	Chr5	17948769	17948776	7
Deletion	Chr2	19090441	19090450	9
Deletion	Chr2	19800568	19800569	1
Deletion	Chr7	20785243	20785248	5
Deletion	Chr3	21449834	21449846	12
Deletion	Chr5	21906147	21906156	9	LOC_Os05g37434
Deletion	Chr1	22561864	22561866	2
Deletion	Chr9	22640046	22640048	2	LOC_Os09g39370
Deletion	Chr2	23750246	23750252	6	LOC_Os02g39350
Deletion	Chr1	24781001	25196000	415000	59
Deletion	Chr1	25203001	25421000	218000	30
Deletion	Chr8	26301001	26384000	83000	14
Deletion	Chr12	26318018	26318026	8
Deletion	Chr5	26888877	26888904	27
Deletion	Chr2	27303375	27327355	23980	LOC_Os02g45054
Deletion	Chr5	27460576	27460582	6
Deletion	Chr1	29647835	29647854	19

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	26229922	26229923	2

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	5284966	5876342	2
Inversion	Chr6	26158815	26876798	LOC_Os06g43510
Inversion	Chr6	26158827	26423738	2
Inversion	Chr8	26301261	26834480	LOC_Os08g41650
Inversion	Chr8	26384030	26834483	LOC_Os08g41780
Inversion	Chr5	26939669	27212069	LOC_Os05g47500
Inversion	Chr5	26942091	27212081	2

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	20459693	Chr6	26876803
Translocation	Chr8	20502339	Chr6	26423739	LOC_Os06g43870
Translocation	Chr12	23933509	Chr2	27303808	LOC_Os12g38920
Translocation	Chr12	23933543	Chr2	27303439	LOC_Os12g38920
Translocation	Chr5	26939676	Chr1	29927280
Translocation	Chr5	26942066	Chr1	29927278	LOC_Os05g46510

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