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Mutant Information

Mutant Name	FN1252-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1252-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3133114	T-C	HOMO	INTERGENIC
SBS	Chr1	3803793	C-T	HOMO	INTERGENIC
SBS	Chr1	5585468	T-C	HET	INTERGENIC
SBS	Chr1	20175389	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g36370
SBS	Chr1	20186724	C-T	HET	INTERGENIC
SBS	Chr1	20225314	A-T	HET	STOP_GAINED	LOC_Os01g36430
SBS	Chr1	25273995	G-T	HET	INTERGENIC
SBS	Chr2	8687255	C-A	HET	INTERGENIC
SBS	Chr3	19540293	A-T	HOMO	INTERGENIC
SBS	Chr3	22122921	C-T	HOMO	INTERGENIC
SBS	Chr3	26929474	G-A	HOMO	INTERGENIC
SBS	Chr4	10780712	G-A	HET	INTERGENIC
SBS	Chr4	12473906	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g22020
SBS	Chr4	13144745	C-A	HET	INTERGENIC
SBS	Chr4	19309449	G-A	HET	INTERGENIC
SBS	Chr5	14009853	G-A	HET	INTERGENIC
SBS	Chr5	19033554	C-A	HET	INTERGENIC
SBS	Chr5	25877289	G-A	HET	INTERGENIC
SBS	Chr5	27674001	C-T	HET	INTRON
SBS	Chr6	11249126	T-C	HET	INTERGENIC
SBS	Chr6	12192611	G-C	HOMO	INTERGENIC
SBS	Chr6	22296456	C-T	HET	INTRON
SBS	Chr6	29574444	G-A	HET	INTERGENIC
SBS	Chr8	854952	T-A	HOMO	INTERGENIC
SBS	Chr8	855458	G-A	HOMO	INTERGENIC
SBS	Chr8	2109101	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	22106116	T-C	HET	INTERGENIC
SBS	Chr9	5719991	T-A	HOMO	INTERGENIC
SBS	Chr10	2084016	T-A	HET	INTERGENIC
SBS	Chr10	6760238	G-C	HET	INTRON
SBS	Chr10	8989156	T-A	HET	INTERGENIC
SBS	Chr10	8989157	G-A	HET	INTERGENIC
SBS	Chr10	12205360	T-C	HET	INTERGENIC
SBS	Chr12	8422821	C-T	HET	INTERGENIC
SBS	Chr12	14308109	G-A	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	1445290	1445308	18
Deletion	Chr8	2379001	2563000	184000	21
Deletion	Chr8	2611826	2611829	3	LOC_Os08g05080
Deletion	Chr8	3819047	3819531	484	LOC_Os08g06840
Deletion	Chr5	6303375	6303382	7
Deletion	Chr11	9074872	9074873	1
Deletion	Chr8	9375030	9375031	1
Deletion	Chr5	9986080	9986084	4
Deletion	Chr9	13309337	13309339	2
Deletion	Chr1	19717531	19717532	1
Deletion	Chr5	20289355	20289358	3	LOC_Os05g34280
Deletion	Chr12	21247509	21247511	2
Deletion	Chr6	22538612	22538616	4
Deletion	Chr8	23124491	23124497	6
Deletion	Chr5	23261268	23261282	14
Deletion	Chr5	23596143	23596144	1
Deletion	Chr6	25039092	25039098	6	LOC_Os06g41760
Deletion	Chr5	26184226	26184227	1
Deletion	Chr1	30215308	30215317	9
Deletion	Chr1	41570335	41570368	33

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	19345089	19345089	1
Insertion	Chr4	15999793	15999799	7	LOC_Os04g27050
Insertion	Chr1	26576421	26576421	1
Insertion	Chr10	18111944	18111944	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2563014	5568910
Inversion	Chr2	11854861	11860925	2
Inversion	Chr3	17182701	26932425	LOC_Os03g30110
Inversion	Chr4	17260025	33168792	2

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	2378619	Chr3	6146750
Translocation	Chr8	2378700	Chr4	33150847	LOC_Os04g55700
Translocation	Chr8	2378730	Chr3	6146715
Translocation	Chr8	2562967	Chr3	21639947	LOC_Os03g38960
Translocation	Chr8	5568864	Chr3	21640100	LOC_Os03g38960
Translocation	Chr8	5568870	Chr4	33153933
Translocation	Chr6	27804544	Chr3	25799371
Translocation	Chr4	31134491	Chr2	33189733
Translocation	Chr4	31134496	Chr3	626738
Translocation	Chr4	31138297	Chr3	626709

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