Search Nipponbare

Mutant Information

Mutant Name	FN1256-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1256-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	34225215	G-A	HOMO	INTERGENIC
SBS	Chr1	7278629	A-T	HET	INTERGENIC
SBS	Chr10	18092748	G-A	HET	INTERGENIC
SBS	Chr11	14018708	G-T	HET	INTRON
SBS	Chr12	14219373	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g24790
SBS	Chr12	20410833	G-A	HET	INTERGENIC
SBS	Chr12	27023375	C-T	HOMO	INTRON
SBS	Chr12	493306	C-A	HOMO	UTR_3_PRIME
SBS	Chr12	5339447	C-T	HOMO	INTERGENIC
SBS	Chr2	14087402	T-G	HOMO	INTRON
SBS	Chr2	18735570	C-T	HOMO	INTERGENIC
SBS	Chr2	31242429	C-T	HET	INTERGENIC
SBS	Chr2	4314960	T-A	HOMO	INTERGENIC
SBS	Chr3	35331091	G-A	HET	INTERGENIC
SBS	Chr3	8236822	G-T	HET	INTERGENIC
SBS	Chr4	15472780	G-A	HOMO	INTERGENIC
SBS	Chr4	25075683	C-T	HET	INTERGENIC
SBS	Chr4	3327306	A-G	HOMO	INTERGENIC
SBS	Chr5	17180044	A-G	HOMO	INTERGENIC
SBS	Chr5	24541421	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g41910
SBS	Chr5	24541424	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g41910
SBS	Chr5	28605534	G-A	HET	INTERGENIC
SBS	Chr5	4159406	C-T	HET	INTERGENIC
SBS	Chr6	9047740	A-T	HOMO	INTERGENIC
SBS	Chr7	5021828	G-A	HET	INTERGENIC
SBS	Chr7	6807739	T-C	HET	INTERGENIC
SBS	Chr8	11053589	C-A	HET	INTRON
SBS	Chr8	15972721	G-T	HET	INTERGENIC
SBS	Chr8	24719170	T-C	HOMO	UTR_3_PRIME
SBS	Chr8	5464625	C-T	HET	INTERGENIC
SBS	Chr9	10984900	T-A	HET	INTERGENIC
SBS	Chr9	8369920	A-C	HET	INTRON
SBS	Chr9	8369923	C-A	HET	INTRON

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	493681	493688	7
Deletion	Chr2	5105072	5115781	10709	LOC_Os02g09880
Deletion	Chr3	5919458	5919467	9
Deletion	Chr12	7763206	7763207	1
Deletion	Chr9	8300001	8357000	57000	8
Deletion	Chr2	8976277	8976283	6
Deletion	Chr3	9154643	9154647	4
Deletion	Chr2	10329952	10329959	7
Deletion	Chr2	14449194	14449195	1
Deletion	Chr5	14974385	14974387	2	LOC_Os05g25740
Deletion	Chr6	16335915	16335920	5
Deletion	Chr8	16572001	16954000	382000	68
Deletion	Chr4	18440001	18449000	9000	2
Deletion	Chr11	19051193	19051199	6
Deletion	Chr2	19152764	19152767	3
Deletion	Chr3	22333784	22333797	13	LOC_Os03g40170
Deletion	Chr5	24557785	24557801	16
Deletion	Chr6	25287447	25288100	653
Deletion	Chr3	26528603	26528609	6
Deletion	Chr3	30718298	30718303	5
Deletion	Chr1	42445345	42445390	45

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	33006968	33006969	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	8298240	8372245	LOC_Os09g14130
Inversion	Chr9	8365427	8374151	LOC_Os09g14120
Inversion	Chr8	14543817	16806761	2

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	17546062	Chr4	9601803

Main menu