Search Results

Mutant Information

Mutant Name	FN1263-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1263-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8582575	A-T	HOMO	INTERGENIC
SBS	Chr1	30656359	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g53350
SBS	Chr2	2653384	C-T	HET	INTERGENIC
SBS	Chr2	12821490	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	15521605	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g26430
SBS	Chr2	24964598	G-A	HET	INTERGENIC
SBS	Chr3	1979970	T-A	HET	INTERGENIC
SBS	Chr3	1979972	G-T	HET	INTERGENIC
SBS	Chr3	4703877	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	5985379	A-T	HET	INTRON
SBS	Chr3	5985380	A-T	HET	INTRON
SBS	Chr4	19955200	G-C	HET	INTERGENIC
SBS	Chr4	26777291	G-T	HET	INTERGENIC
SBS	Chr5	9053231	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g16020
SBS	Chr5	13804115	A-G	HET	INTRON
SBS	Chr5	14520212	A-G	HET	UTR_5_PRIME
SBS	Chr5	23458833	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g39920
SBS	Chr6	15403490	C-T	HOMO	INTERGENIC
SBS	Chr6	21983343	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g37224
SBS	Chr6	29942687	C-A	HET	INTRON
SBS	Chr6	30516435	T-A	HET	INTERGENIC
SBS	Chr7	943188	A-C	HOMO	INTERGENIC
SBS	Chr7	17293394	A-G	HET	INTERGENIC
SBS	Chr7	19280151	G-A	HET	INTRON
SBS	Chr8	2789410	A-G	HOMO	INTRON
SBS	Chr8	5206931	G-T	HET	INTERGENIC
SBS	Chr8	26784802	A-T	HET	INTERGENIC
SBS	Chr9	1938462	G-A	HET	INTERGENIC
SBS	Chr9	11890809	G-C	HET	INTERGENIC
SBS	Chr10	2302502	G-A	HOMO	INTERGENIC
SBS	Chr10	17396598	G-A	HET	INTERGENIC
SBS	Chr10	18933674	C-T	HET	INTERGENIC
SBS	Chr11	1676057	T-C	HET	INTERGENIC
SBS	Chr11	22896987	G-T	HOMO	INTERGENIC
SBS	Chr11	23470622	G-A	HOMO	UTR_3_PRIME
SBS	Chr12	14740361	C-T	HET	INTERGENIC
SBS	Chr12	15417287	C-T	HET	INTERGENIC
SBS	Chr12	19354305	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os12g32080
SBS	Chr12	20916991	C-T	HOMO	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	765764	765765	1
Deletion	Chr7	969001	1000000	31000	6
Deletion	Chr2	1718316	1718346	30
Deletion	Chr12	1721206	1721214	8	LOC_Os12g04110
Deletion	Chr7	5045703	5045725	22
Deletion	Chr7	5134629	5134636	7	LOC_Os07g09675
Deletion	Chr2	6232203	6232293	90
Deletion	Chr1	6679775	6679776	1
Deletion	Chr2	8419535	8419545	10
Deletion	Chr9	9356001	9879000	523000	89
Deletion	Chr6	10934619	10934628	9	LOC_Os06g19210
Deletion	Chr4	12592457	12592469	12
Deletion	Chr9	14762769	14762778	9
Deletion	Chr6	17903001	18688000	785000	120
Deletion	Chr5	19345819	19345820	1
Deletion	Chr1	19672244	19672256	12
Deletion	Chr6	23828703	23828704	1
Deletion	Chr3	27950701	27950728	27
Deletion	Chr4	34028322	34028334	12	LOC_Os04g57100
Deletion	Chr1	34164037	34164059	22	LOC_Os01g59140

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr4	8474264	8474264	1	LOC_Os04g15580
Insertion	Chr7	24000215	24000215	1
Insertion	Chr7	22241223	22241224	2
Insertion	Chr8	23181519	23181520	2
Insertion	Chr10	11615134	11615135	2
Insertion	Chr12	8869031	8869032	2
Insertion	Chr7	11629690	11629703	14	LOC_Os07g20135
Insertion	Chr12	13506120	13506120	1
Insertion	Chr2	33978813	33978813	1
Insertion	Chr9	22681727	22681727	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	943070	999922
Inversion	Chr11	13002824	13814167	LOC_Os11g24250
Inversion	Chr11	13009569	13264292	2
Inversion	Chr6	17887723	17892718

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr7	999659	Chr1	21739882
Translocation	Chr7	999872	Chr6	19323240
Translocation	Chr7	999901	Chr1	21739924
Translocation	Chr6	19323241	Chr1	21739883
Translocation	Chr6	19323518	Chr1	21739872
Translocation	Chr5	25539360	Chr1	40623992

Main menu