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Mutant Information

Mutant Name	FN1264-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1264-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Albino and Normal (20% Albino) TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Low (Between 25% and 75%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29892130	A-T	HET	INTERGENIC
SBS	Chr1	38435424	G-T	HOMO	INTERGENIC
SBS	Chr1	38726659	G-A	HET	INTERGENIC
SBS	Chr1	43306	A-G	HET	INTERGENIC
SBS	Chr10	12926467	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g25090
SBS	Chr10	3470004	G-T	HET	INTERGENIC
SBS	Chr11	15690487	A-C	HET	INTRON
SBS	Chr11	5969174	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g10820
SBS	Chr12	22858418	G-A	HET	INTRON
SBS	Chr12	24420049	C-T	HOMO	INTERGENIC
SBS	Chr2	22604160	C-T	HET	INTRON
SBS	Chr2	26254385	C-T	HET	INTERGENIC
SBS	Chr2	28954704	G-A	HET	INTRON
SBS	Chr2	31900357	C-T	HET	INTRON
SBS	Chr3	17085702	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr3	24739053	C-T	HET	INTERGENIC
SBS	Chr3	34352986	G-A	HET	INTERGENIC
SBS	Chr3	34832667	T-A	HET	INTERGENIC
SBS	Chr3	36311996	G-T	HET	INTERGENIC
SBS	Chr4	1159321	C-T	HOMO	INTERGENIC
SBS	Chr4	6527339	G-A	HET	INTERGENIC
SBS	Chr4	81924	C-T	HOMO	INTERGENIC
SBS	Chr5	9458535	C-T	HOMO	INTERGENIC
SBS	Chr5	9458536	T-A	HOMO	INTERGENIC
SBS	Chr6	10587606	A-C	HOMO	INTERGENIC
SBS	Chr6	12672722	C-T	HOMO	INTERGENIC
SBS	Chr6	17652576	T-A	HOMO	INTERGENIC
SBS	Chr6	19953420	T-A	HET	INTRON
SBS	Chr6	26770456	A-G	HET	INTERGENIC
SBS	Chr7	12464078	C-T	HOMO	INTERGENIC
SBS	Chr7	4718229	C-T	HOMO	INTERGENIC
SBS	Chr7	8437178	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr8	3643535	C-T	HET	INTERGENIC
SBS	Chr9	13805119	C-G	HOMO	INTRON

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	1961917	1961922	5
Deletion	Chr11	5311300	5311302	2	LOC_Os11g09919
Deletion	Chr8	6240443	6240446	3	LOC_Os08g10600
Deletion	Chr10	6988363	6988377	14
Deletion	Chr6	12349720	12349738	18	LOC_Os06g21380
Deletion	Chr8	15675057	15675069	12
Deletion	Chr9	18032629	18032632	3
Deletion	Chr1	21426733	21426735	2
Deletion	Chr3	22141082	22141091	9
Deletion	Chr2	22180439	22180444	5	LOC_Os02g36780
Deletion	Chr12	24454232	24455372	1140	LOC_Os12g39620
Deletion	Chr11	24647169	24647176	7
Deletion	Chr4	25924551	25924553	2
Deletion	Chr11	26689001	26704000	15000	3
Deletion	Chr4	26907442	26907446	4
Deletion	Chr12	26960994	26961002	8	LOC_Os12g43450
Deletion	Chr8	27332903	27332909	6	LOC_Os08g43240
Deletion	Chr5	28003625	28003640	15	LOC_Os05g48850
Deletion	Chr1	38386150	38386151	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr12	22882991	22882991	1
Insertion	Chr2	28502866	28502866	1
Insertion	Chr3	9615995	9615995	1
Insertion	Chr5	20783822	20783822	1
Insertion	Chr7	18898804	18898804	1
Insertion	Chr8	16871125	16871136	12
Insertion	Chr9	15024747	15024764	18
Insertion	Chr9	6065310	6065310	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	13494081	13884607	2
Inversion	Chr5	22210360	22977544	2
Inversion	Chr5	24870612	24992151

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	8483266	Chr2	30163186	LOC_Os11g15070
Translocation	Chr8	9573477	Chr5	22210385	LOC_Os05g37900
Translocation	Chr7	10476836	Chr1	1512463	LOC_Os01g03660
Translocation	Chr8	10991580	Chr3	15245742	2
Translocation	Chr5	14705823	Chr2	12182619
Translocation	Chr3	15238126	Chr2	3401782	LOC_Os03g26690
Translocation	Chr11	26265710	Chr7	13389429	2
Translocation	Chr11	26492320	Chr2	30163179	LOC_Os11g43860

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