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Mutant Information

Mutant Name	FN1265-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1265-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21103802	A-T	HET	INTERGENIC
SBS	Chr1	27925054	A-G	HET	UTR_3_PRIME
SBS	Chr1	30016585	C-G	HET	SYNONYMOUS_CODING
SBS	Chr1	34311847	T-G	HET	INTRON
SBS	Chr1	9900514	C-T	HET	INTRON
SBS	Chr11	15410703	G-A	HOMO	INTERGENIC
SBS	Chr11	4481847	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g08480
SBS	Chr12	20297810	C-T	HET	INTERGENIC
SBS	Chr12	24045276	A-G	HET	UTR_5_PRIME
SBS	Chr2	14386950	T-C	HET	SYNONYMOUS_CODING
SBS	Chr2	17919865	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os02g30160
SBS	Chr2	20513106	G-A	HOMO	INTERGENIC
SBS	Chr2	31842719	C-T	HET	INTERGENIC
SBS	Chr2	33108888	T-G	HET	INTERGENIC
SBS	Chr2	8807055	G-A	HET	INTERGENIC
SBS	Chr5	1723861	T-G	HET	INTERGENIC
SBS	Chr5	23843401	T-C	HET	INTERGENIC
SBS	Chr5	24407220	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	26696178	T-C	HET	INTRON
SBS	Chr5	27516401	C-A	HET	INTERGENIC
SBS	Chr6	23289365	G-T	HET	INTERGENIC
SBS	Chr6	23895900	G-T	HET	INTERGENIC
SBS	Chr6	28593499	G-C	HET	INTRON
SBS	Chr6	3324974	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g07010
SBS	Chr6	3343837	A-T	HOMO	INTRON
SBS	Chr7	27576931	A-T	HOMO	INTERGENIC
SBS	Chr8	20257874	C-G	HET	INTERGENIC
SBS	Chr8	4493240	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr8	4931363	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	6631333	G-T	HET	INTERGENIC
SBS	Chr9	13342129	G-T	HOMO	INTRON
SBS	Chr9	16149906	C-T	HET	INTERGENIC
SBS	Chr9	9102812	G-T	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	113657	113663	6	LOC_Os03g01160
Deletion	Chr7	2813726	2813730	4	LOC_Os07g05850
Deletion	Chr8	3221803	3221827	24
Deletion	Chr4	7190225	7190229	4
Deletion	Chr10	9313175	9313177	2
Deletion	Chr12	12438652	12438659	7
Deletion	Chr6	13845075	13845106	31
Deletion	Chr2	13878001	13952000	74000	13
Deletion	Chr2	13967001	13980000	13000	LOC_Os02g24134
Deletion	Chr5	15947975	15947980	5
Deletion	Chr11	18003501	18003503	2
Deletion	Chr9	18815816	18815825	9
Deletion	Chr5	19424667	19424668	1
Deletion	Chr10	20122801	20122820	19
Deletion	Chr2	21946243	21946332	89
Deletion	Chr2	25243357	25243364	7
Deletion	Chr6	26149694	26149697	3
Deletion	Chr4	32065013	32065016	3
Deletion	Chr1	38761844	38761847	3	LOC_Os01g66740

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	18781253	18781253	1	LOC_Os01g34100
Insertion	Chr11	23416708	23416708	1	LOC_Os11g39330
Insertion	Chr11	27585620	27585621	2
Insertion	Chr2	18089824	18089825	2
Insertion	Chr3	10224923	10224924	2	LOC_Os03g18230
Insertion	Chr5	12107831	12107831	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	1854575	3326332	LOC_Os06g07010
Inversion	Chr6	1858584	3326308	2
Inversion	Chr2	13877755	14206589
Inversion	Chr2	13979938	14206594	LOC_Os02g24134

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	1854503	Chr4	22146747
Translocation	Chr6	3326292	Chr4	22146572	LOC_Os06g07010
Translocation	Chr11	13216944	Chr10	18828727
Translocation	Chr3	24696564	Chr1	10007551	LOC_Os01g17390
Translocation	Chr3	24702160	Chr2	21946245	LOC_Os03g43990
Translocation	Chr3	24702200	Chr1	10007598	2

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