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Mutant Information

Mutant Name	FN1266-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1266-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Low (Between 25% and 74%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Phenotype Changes (Hover to Zoom-In)
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25294021	T-G	HOMO	INTRON
SBS	Chr1	27328086	T-C	HOMO	INTERGENIC
SBS	Chr1	27328089	C-T	HOMO	INTERGENIC
SBS	Chr1	4805437	G-A	HET	INTERGENIC
SBS	Chr10	11683368	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr10	14602857	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g28120
SBS	Chr10	7318949	G-A	HOMO	INTERGENIC
SBS	Chr11	15764663	T-G	HET	INTERGENIC
SBS	Chr11	20896531	C-T	HET	INTERGENIC
SBS	Chr12	3416331	T-A	HET	INTERGENIC
SBS	Chr2	21498334	T-C	HOMO	INTERGENIC
SBS	Chr2	23031047	C-A	HET	INTERGENIC
SBS	Chr3	5776600	T-C	HOMO	INTERGENIC
SBS	Chr3	5776605	T-C	HOMO	INTERGENIC
SBS	Chr3	5776613	A-T	HOMO	INTERGENIC
SBS	Chr4	9405193	G-C	HET	INTERGENIC
SBS	Chr6	11296652	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr7	23532438	C-A	HET	INTRON
SBS	Chr7	27750671	G-C	HET	INTERGENIC
SBS	Chr8	10012170	T-A	HET	INTERGENIC
SBS	Chr8	17612235	T-G	HOMO	INTERGENIC
SBS	Chr8	21360769	A-T	HET	INTERGENIC
SBS	Chr8	8810960	A-T	HET	INTERGENIC

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	736656	736657	1	LOC_Os10g02160
Deletion	Chr2	3236458	3236459	1
Deletion	Chr1	3709021	3709037	16
Deletion	Chr6	4854365	4854369	4	LOC_Os06g09540
Deletion	Chr10	7902863	7902865	2
Deletion	Chr12	11535447	11535455	8
Deletion	Chr9	17383865	17383903	38
Deletion	Chr4	18974573	18974582	9
Deletion	Chr9	19524599	19524605	6	LOC_Os09g32740
Deletion	Chr1	20872097	20872108	11	LOC_Os01g37380
Deletion	Chr7	21526697	21527031	334	LOC_Os07g35985
Deletion	Chr2	21682794	21816766	133972	13
Deletion	Chr10	21992972	21992973	1
Deletion	Chr11	22223001	22525000	302000	36
Deletion	Chr11	22530001	22562000	32000	4
Deletion	Chr11	22564001	23196000	632000	89
Deletion	Chr7	24929715	24929725	10
Deletion	Chr11	26483951	26483953	2
Deletion	Chr4	28287182	28287183	1
Deletion	Chr1	35488370	35488371	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	13390402	13390403	2
Insertion	Chr3	17333768	17333768	1
Insertion	Chr7	736926	736926	1
Insertion	Chr8	26815767	26815768	2

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	21362594	21498394
Inversion	Chr2	21498433	21682804
Inversion	Chr2	27334120	28068845	2

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	13372018	Chr10	16479598	LOC_Os12g23590
Translocation	Chr12	13386894	Chr10	15370828	LOC_Os10g29570
Translocation	Chr7	21527010	Chr2	27334123	2
Translocation	Chr11	23187874	Chr5	317260	LOC_Os05g01540

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