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Mutant Information

Mutant Name	FN1268-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1268-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15412168	T-C	HET	INTERGENIC
SBS	Chr1	23454327	A-T	HET	INTERGENIC
SBS	Chr1	3419336	G-T	HET	INTERGENIC
SBS	Chr10	8377240	C-G	HET	INTRON
SBS	Chr11	23924334	T-G	HOMO	INTERGENIC
SBS	Chr11	26085529	T-G	HET	INTERGENIC
SBS	Chr12	13936819	C-G	HET	INTRON
SBS	Chr12	25374161	G-T	HET	STOP_GAINED	LOC_Os12g41000
SBS	Chr12	3125877	G-A	HET	INTERGENIC
SBS	Chr2	21159735	C-A	HOMO	INTRON
SBS	Chr2	2441635	C-T	HET	INTRON
SBS	Chr2	32842539	C-A	HET	INTERGENIC
SBS	Chr2	32842541	G-A	HET	INTERGENIC
SBS	Chr3	17410500	G-A	HOMO	UTR_3_PRIME
SBS	Chr3	26262907	C-A	HOMO	INTRON
SBS	Chr3	26582747	T-G	HOMO	INTERGENIC
SBS	Chr3	3562112	T-A	HOMO	INTRON
SBS	Chr4	14547660	G-A	HOMO	INTERGENIC
SBS	Chr4	15177034	A-G	HOMO	INTERGENIC
SBS	Chr4	20182792	A-T	HET	INTERGENIC
SBS	Chr4	23150341	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g38970
SBS	Chr4	23486852	T-G	HET	INTERGENIC
SBS	Chr5	13514488	C-T	HET	INTERGENIC
SBS	Chr5	26485727	A-G	HET	INTERGENIC
SBS	Chr5	3579783	C-T	HOMO	INTERGENIC
SBS	Chr5	7475076	A-T	HET	INTRON
SBS	Chr6	14423532	C-G	HET	INTRON
SBS	Chr6	1498201	C-A	HOMO	INTRON
SBS	Chr6	1498202	A-T	HOMO	INTRON
SBS	Chr6	20544422	T-C	HET	INTERGENIC
SBS	Chr6	29646252	C-A	HET	INTERGENIC
SBS	Chr6	8293810	C-T	HET	INTERGENIC
SBS	Chr6	9394529	C-T	HET	INTERGENIC
SBS	Chr7	16453563	C-T	HET	INTERGENIC
SBS	Chr7	21508948	T-C	HET	INTERGENIC
SBS	Chr7	5486645	G-T	HET	INTERGENIC
SBS	Chr7	8347720	C-A	HET	STOP_LOST	LOC_Os07g14630
SBS	Chr8	10827359	T-C	HET	INTERGENIC
SBS	Chr8	10827407	C-G	HET	INTERGENIC
SBS	Chr8	10827446	T-C	HET	INTERGENIC
SBS	Chr8	13253115	T-G	HOMO	INTERGENIC
SBS	Chr8	14253738	T-A	HOMO	INTERGENIC
SBS	Chr8	21436305	C-A	HOMO	INTRON
SBS	Chr8	4672911	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g08190
SBS	Chr9	11214549	C-G	HET	INTERGENIC
SBS	Chr9	5614901	C-T	HOMO	INTERGENIC

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	288798	288801	3
Deletion	Chr12	2660574	2660585	11
Deletion	Chr5	3031508	3031520	12
Deletion	Chr4	3372105	3372111	6
Deletion	Chr5	3972511	3972518	7	LOC_Os05g07450
Deletion	Chr1	7089869	7089876	7
Deletion	Chr11	7619165	7619170	5
Deletion	Chr8	10827594	10827929	335
Deletion	Chr8	13253921	13253923	2
Deletion	Chr10	15698856	15698868	12	LOC_Os10g30210
Deletion	Chr6	18146891	18146894	3
Deletion	Chr12	19153631	19153632	1
Deletion	Chr9	21089733	21089755	22
Deletion	Chr4	23483597	23483609	12
Deletion	Chr3	23784888	23784894	6
Deletion	Chr4	23974665	23974670	5
Deletion	Chr5	25661764	25661765	1
Deletion	Chr8	27625588	27625590	2
Deletion	Chr5	27901512	27901528	16
Deletion	Chr5	28068368	28068369	1	LOC_Os05g48930
Deletion	Chr4	29266461	29266462	1
Deletion	Chr2	33899822	33899824	2

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	37005358	37005358	1
Insertion	Chr1	40542753	40542756	4
Insertion	Chr10	10760098	10760098	1
Insertion	Chr11	13724087	13724088	2
Insertion	Chr11	16919102	16919103	2
Insertion	Chr12	20273415	20273416	2
Insertion	Chr7	20776494	20776494	1

No Inversion

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr8	4171365	Chr7	11412274
Translocation	Chr8	4739444	Chr7	11412235
Translocation	Chr8	12879643	Chr1	17178357
Translocation	Chr3	25354096	Chr1	27882664

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