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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13143629	A-T	HET	SYNONYMOUS_CODING
SBS	Chr1	13143630	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g23380
SBS	Chr1	17004927	T-G	HET	INTERGENIC
SBS	Chr1	22792469	A-T	HET	INTRON
SBS	Chr1	36310193	C-T	HET	INTERGENIC
SBS	Chr10	13118157	G-T	HET	INTERGENIC
SBS	Chr10	17659242	A-T	HET	INTRON
SBS	Chr11	13555254	T-G	HET	INTERGENIC
SBS	Chr11	15143984	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26450
SBS	Chr12	11698176	T-C	HOMO	INTERGENIC
SBS	Chr12	14278209	A-G	HET	INTERGENIC
SBS	Chr12	20827046	G-T	HOMO	INTERGENIC
SBS	Chr12	2181166	G-T	HET	INTERGENIC
SBS	Chr12	22556214	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	16312423	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr2	16632726	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g28074
SBS	Chr3	25307441	G-T	HOMO	INTERGENIC
SBS	Chr3	36225829	T-A	HET	INTERGENIC
SBS	Chr4	18059425	A-G	HET	INTERGENIC
SBS	Chr4	21674521	A-C	HET	INTERGENIC
SBS	Chr4	32060142	A-T	HOMO	STOP_GAINED	LOC_Os04g53800
SBS	Chr4	8530585	A-G	HET	INTRON
SBS	Chr5	16145148	T-G	HET	INTRON
SBS	Chr6	7417929	G-A	HOMO	INTRON
SBS	Chr6	7675555	G-A	HOMO	INTERGENIC
SBS	Chr7	154068	T-G	HOMO	INTERGENIC
SBS	Chr7	6834248	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g12210
SBS	Chr7	6834249	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	7844806	C-T	HOMO	INTERGENIC
SBS	Chr8	2177182	G-A	HET	INTERGENIC
SBS	Chr8	25138879	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os08g39710
SBS	Chr8	25918272	C-A	HET	INTRON
SBS	Chr8	3011811	C-T	HET	INTRON
SBS	Chr8	7531325	C-T	HET	INTRON
SBS	Chr9	12661906	G-A	HOMO	INTERGENIC
SBS	Chr9	5101207	G-A	HOMO	SYNONYMOUS_CODING

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2233534	2233565	31
Deletion	Chr12	3423165	3423264	99
Deletion	Chr5	4904064	4904075	11
Deletion	Chr4	5671722	5671723	1
Deletion	Chr12	6558858	6558860	2
Deletion	Chr7	6839368	6839369	1
Deletion	Chr9	7845401	7845403	2
Deletion	Chr8	8687952	8687953	1
Deletion	Chr8	12404345	12404346	1
Deletion	Chr9	13052262	13292537	240275	38
Deletion	Chr12	13506038	13506047	9
Deletion	Chr10	16674376	16674377	1
Deletion	Chr4	17513199	17513204	5	LOC_Os04g29450
Deletion	Chr4	18944967	18944971	4
Deletion	Chr8	21197736	21204673	6937	2
Deletion	Chr11	21280265	21280266	1
Deletion	Chr5	21632714	21632716	2
Deletion	Chr3	31464835	31464844	9	LOC_Os03g55290

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	4807434	4807435	2
Insertion	Chr2	31002888	31002891	4
Insertion	Chr2	31985103	31985103	1
Insertion	Chr9	2705294	2705294	1	LOC_Os09g05030

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	12032210	12282707	LOC_Os12g21820
Inversion	Chr9	13059938	13439403
Inversion	Chr9	13236973	13439394	LOC_Os09g21850
Inversion	Chr1	16912059	16949154

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	3123756	Chr9	5408876	LOC_Os12g06480
Translocation	Chr12	3123762	Chr9	5410515	LOC_Os12g06480
Translocation	Chr12	13801876	Chr11	8348429	LOC_Os11g14840
Translocation	Chr12	13805104	Chr11	8348421	2

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