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Mutant Information

Mutant Name	FN1270-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1270-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = High (Between 126% and 175%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17090217	G-T	HET	INTERGENIC
SBS	Chr1	17816344	G-A	HET	INTERGENIC
SBS	Chr1	17816345	A-T	HET	INTERGENIC
SBS	Chr1	29675646	C-A	HET	INTERGENIC
SBS	Chr10	15468601	C-G	HOMO	INTERGENIC
SBS	Chr11	15685641	C-T	HET	INTRON
SBS	Chr11	19056214	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g32250
SBS	Chr11	8735013	A-G	HET	INTERGENIC
SBS	Chr12	12380388	G-A	HOMO	INTERGENIC
SBS	Chr12	13324732	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g23540
SBS	Chr12	19407658	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g32160
SBS	Chr12	291601	G-T	HET	INTERGENIC
SBS	Chr12	5288221	G-A	HOMO	INTERGENIC
SBS	Chr2	26304188	T-G	HOMO	INTERGENIC
SBS	Chr3	17752493	C-A	HOMO	INTERGENIC
SBS	Chr3	22259667	A-T	HOMO	INTERGENIC
SBS	Chr3	24315106	C-T	HOMO	INTERGENIC
SBS	Chr3	24635692	C-T	HOMO	INTERGENIC
SBS	Chr3	24669647	G-A	HOMO	INTERGENIC
SBS	Chr4	14360575	C-A	HET	SYNONYMOUS_CODING
SBS	Chr5	11489228	A-T	HET	INTERGENIC
SBS	Chr5	15677004	T-C	HET	INTERGENIC
SBS	Chr5	8664270	C-T	HOMO	INTERGENIC
SBS	Chr5	9936315	A-T	HET	INTERGENIC
SBS	Chr6	14635121	C-T	HET	INTERGENIC
SBS	Chr6	15728444	C-T	HET	INTERGENIC
SBS	Chr6	17419281	G-A	HET	INTRON
SBS	Chr6	19892174	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g34140
SBS	Chr7	14930976	C-A	HOMO	INTRON
SBS	Chr7	23995263	T-G	HOMO	INTERGENIC
SBS	Chr7	24982855	C-A	HOMO	INTERGENIC
SBS	Chr8	14411674	A-G	HOMO	INTERGENIC
SBS	Chr8	18170424	G-A	HOMO	INTRON
SBS	Chr8	5697275	G-T	HOMO	INTRON
SBS	Chr8	9335198	C-G	HET	INTERGENIC
SBS	Chr9	11709481	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g19570
SBS	Chr9	4241381	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g08180

Deletions: 12

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	4349164	4349165	1
Deletion	Chr12	6914779	6914791	12	LOC_Os12g12570
Deletion	Chr8	10393235	10393236	1
Deletion	Chr5	13802270	13802280	10	LOC_Os05g23970
Deletion	Chr5	13961589	13978397	16808	2
Deletion	Chr1	17816245	17838782	22537	4
Deletion	Chr1	19317713	19317720	7
Deletion	Chr8	19635014	19635020	6	LOC_Os08g31670
Deletion	Chr3	24315122	24315123	1
Deletion	Chr12	25301228	25301242	14	LOC_Os12g40860
Deletion	Chr6	26162689	26162690	1
Deletion	Chr8	27491102	27491107	5

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23930692	23930693	2
Insertion	Chr1	34967776	34967776	1
Insertion	Chr11	17018891	17018892	2
Insertion	Chr12	22090334	22090335	2
Insertion	Chr5	14161161	14161170	10
Insertion	Chr7	23010388	23010389	2
Insertion	Chr7	24934517	24934519	3	LOC_Os07g41600
Insertion	Chr9	7766568	7766568	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	14654899	14662855
Inversion	Chr11	20865403	28679730

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	13969188	Chr8	23824948	LOC_Os08g37600
Translocation	Chr6	25918653	Chr1	17816287	LOC_Os06g43120

Tandem duplications: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Tandem Duplication	Chr1	17808683	17838778	30095

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