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Mutant Information

Mutant Name	FN1274-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1274-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Low (Between 25% and 74%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22396004	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g39710
SBS	Chr10	1606824	T-A	HOMO	INTERGENIC
SBS	Chr10	1606825	T-A	HOMO	INTERGENIC
SBS	Chr10	18477750	C-A	HOMO	INTRON
SBS	Chr10	3601923	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	13506025	A-T	HET	INTERGENIC
SBS	Chr11	2293273	T-C	HOMO	INTERGENIC
SBS	Chr12	22915621	G-A	HET	INTERGENIC
SBS	Chr12	27493344	C-G	HET	INTERGENIC
SBS	Chr2	23859759	T-C	HOMO	INTERGENIC
SBS	Chr3	21812393	G-A	HET	INTERGENIC
SBS	Chr3	29749192	T-A	HET	INTERGENIC
SBS	Chr3	30667704	C-T	HET	INTRON
SBS	Chr4	35156646	C-T	HET	INTERGENIC
SBS	Chr5	25643062	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g44100
SBS	Chr5	29746149	C-A	HOMO	INTERGENIC
SBS	Chr5	29746150	C-A	HOMO	INTERGENIC
SBS	Chr6	22230188	A-G	HET	INTERGENIC
SBS	Chr6	23142911	C-T	HET	INTERGENIC
SBS	Chr6	6566273	C-T	HET	INTERGENIC
SBS	Chr8	17345826	C-G	HET	INTRON

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	274075	274078	3
Deletion	Chr6	1600610	1600614	4
Deletion	Chr10	2789702	2789711	9
Deletion	Chr6	4637777	4637783	6
Deletion	Chr7	6640430	6640432	2
Deletion	Chr1	8348894	8348903	9
Deletion	Chr3	8794608	8794612	4
Deletion	Chr4	10913968	10913982	14	LOC_Os04g19590
Deletion	Chr4	11768635	11768636	1
Deletion	Chr5	13441843	13441847	4
Deletion	Chr1	13990219	13990233	14
Deletion	Chr5	18939584	18939587	3
Deletion	Chr6	23180390	23180394	4
Deletion	Chr2	24506035	24506047	12
Deletion	Chr5	24666060	24666066	6	LOC_Os05g42180
Deletion	Chr3	27280884	27280898	14	LOC_Os03g47980
Deletion	Chr2	31739182	31739183	1
Deletion	Chr4	35323786	35323794	8	LOC_Os04g59400

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	23713639	23713640	2
Insertion	Chr8	20289288	20289290	3

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	1680713	2068008	LOC_Os02g03950
Inversion	Chr5	27940786	28181061	LOC_Os05g49120
Inversion	Chr5	28181061	29708816	LOC_Os05g49120

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4978554	Chr2	33242230	2
Translocation	Chr12	10629446	Chr9	16923199	2
Translocation	Chr11	13259842	Chr4	10208284	LOC_Os04g18470

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