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Mutant Information

Mutant Name	FN1275-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1275-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 20

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12530804	A-C	HET	SYNONYMOUS_CODING
SBS	Chr1	16339035	G-T	HET	INTERGENIC
SBS	Chr1	7635314	C-T	HOMO	INTERGENIC
SBS	Chr10	3323948	A-G	HOMO	INTERGENIC
SBS	Chr11	10667584	G-A	HOMO	STOP_GAINED	LOC_Os11g18790
SBS	Chr12	20466887	C-T	HET	INTERGENIC
SBS	Chr2	11156012	T-A	HET	INTRON
SBS	Chr2	21108171	G-T	HOMO	INTERGENIC
SBS	Chr2	24481312	G-A	HOMO	INTERGENIC
SBS	Chr2	34952656	T-G	HOMO	INTERGENIC
SBS	Chr3	24572185	A-C	HOMO	INTERGENIC
SBS	Chr5	3812087	C-T	HET	INTERGENIC
SBS	Chr6	21693620	C-T	HET	INTERGENIC
SBS	Chr6	2383215	G-A	HET	INTERGENIC
SBS	Chr7	27358506	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g45840
SBS	Chr7	4280891	T-C	HET	INTERGENIC
SBS	Chr8	6350739	A-C	HET	INTERGENIC
SBS	Chr8	7363781	C-G	HET	UTR_3_PRIME
SBS	Chr9	3831409	C-T	HOMO	INTERGENIC
SBS	Chr9	9001140	A-G	HET	INTERGENIC

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	2142966	2142969	3
Deletion	Chr2	4141038	4141039	1
Deletion	Chr12	5170482	5170488	6
Deletion	Chr1	7122026	7122035	9	LOC_Os01g12860
Deletion	Chr9	8986698	8986715	17
Deletion	Chr10	11296001	12023000	727000	105
Deletion	Chr6	12515817	12515844	27
Deletion	Chr9	12719866	12719876	10
Deletion	Chr3	14042392	14042393	1
Deletion	Chr11	17168079	17168083	4
Deletion	Chr2	22272134	22272147	13
Deletion	Chr1	22681633	22681634	1
Deletion	Chr6	23727188	23727195	7
Deletion	Chr7	24666342	24666345	3	LOC_Os07g41200
Deletion	Chr4	26582210	26582211	1
Deletion	Chr7	28126170	28126176	6
Deletion	Chr6	29347200	29347202	2

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr4	26758442	26758445	4
Insertion	Chr5	14454150	14454150	1
Insertion	Chr6	11490961	11490961	1

No Inversion

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	158659	Chr2	19267933

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