Search Results

Mutant Information

Mutant Name	FN1279-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1279-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000014 (Panicle Weight) = Normal (Between 75% and 125%) TO:0000207 (Plant height) = Normal (Between 75% and 125%) TO:0000445 (Seed Number) = Normal (Between 75% and 125%) TO:0000639 (Seed fertility) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13152094	A-G	HOMO	INTERGENIC
SBS	Chr1	31961201	C-T	HOMO	INTERGENIC
SBS	Chr3	1508732	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g03490
SBS	Chr3	14639766	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g25580
SBS	Chr3	18042067	A-T	HET	INTERGENIC
SBS	Chr3	31773241	G-A	HET	INTERGENIC
SBS	Chr3	33201164	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g58270
SBS	Chr4	20839093	C-G	HOMO	INTERGENIC
SBS	Chr5	12178208	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g20750
SBS	Chr5	21292498	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g35900
SBS	Chr6	2617627	C-T	HET	INTRON
SBS	Chr6	4122204	T-A	HOMO	INTERGENIC
SBS	Chr6	9854746	A-G	HET	INTRON
SBS	Chr6	11698567	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g20370
SBS	Chr6	11876427	C-G	HET	INTERGENIC
SBS	Chr6	20443300	G-A	HET	STOP_GAINED	LOC_Os06g35130
SBS	Chr6	20674187	T-C	HET	INTERGENIC
SBS	Chr6	22248460	C-T	HOMO	INTRON
SBS	Chr7	28779024	C-T	HOMO	INTERGENIC
SBS	Chr8	23802130	G-A	HET	INTERGENIC
SBS	Chr9	3629749	A-G	HET	INTRON
SBS	Chr9	15866289	T-A	HET	INTERGENIC
SBS	Chr10	10600041	G-T	HOMO	INTRON
SBS	Chr10	21689316	C-T	HET	INTERGENIC
SBS	Chr11	8234710	C-T	HET	INTERGENIC
SBS	Chr11	14712983	C-T	HET	INTRON
SBS	Chr11	14799368	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g25950
SBS	Chr11	23695413	G-C	HOMO	INTERGENIC
SBS	Chr12	13240971	A-T	HOMO	SYNONYMOUS_CODING
SBS	Chr12	16390619	T-C	HOMO	INTERGENIC
SBS	Chr12	16494423	C-T	HET	INTERGENIC
SBS	Chr12	17618977	C-A	HOMO	INTERGENIC
SBS	Chr12	24811435	G-A	HOMO	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	2255950	2255951	1
Deletion	Chr11	2473459	2473461	2
Deletion	Chr5	2510144	2512066	1922	LOC_Os05g05160
Deletion	Chr7	2561983	2561988	5
Deletion	Chr8	3133843	3133851	8
Deletion	Chr9	4348875	4348878	3
Deletion	Chr1	4855194	4855195	1
Deletion	Chr11	4898654	4898655	1
Deletion	Chr1	6026949	6026954	5	LOC_Os01g11260
Deletion	Chr2	7454261	7454264	3
Deletion	Chr1	10198072	10198075	3
Deletion	Chr4	10510758	10510759	1
Deletion	Chr10	12972310	12972313	3
Deletion	Chr7	13402945	13402955	10
Deletion	Chr6	13506114	13506123	9
Deletion	Chr9	14885675	14885677	2
Deletion	Chr6	15929005	15929012	7
Deletion	Chr11	16930263	16930264	1
Deletion	Chr10	16991001	17024000	33000	6
Deletion	Chr6	17441085	17441086	1
Deletion	Chr1	18416184	18416188	4
Deletion	Chr12	20728588	20728589	1
Deletion	Chr7	22262433	22262434	1
Deletion	Chr3	22442586	22442616	30
Deletion	Chr2	26493612	26493617	5

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr5	20239916	20239917	2
Insertion	Chr11	3800394	3800394	1
Insertion	Chr9	249506	249506	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	14905754	15349536
Inversion	Chr1	29814888	34448236	LOC_Os01g59570

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	4916892	Chr2	11824567
Translocation	Chr9	7426408	Chr8	1349959
Translocation	Chr4	16367929	Chr2	15089842	LOC_Os02g25760

Main menu