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Mutant Information

Mutant Name	FN1280-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1280-S Alignment File
Seed Availability	Yes [Order Seeds]
Phenotype	TO:0000326 (Leaf Color) = Normal TO:0000137 (Days to heading) = Normal (Between 75% and 125%) TO:0000346 (Tiller number) = Normal (Between 75% and 125%) TO:0000430 (Germination Rate) = Normal (Between 75% and 125%) For more information, please see this phenotype file
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 37

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14797339	A-T	HOMO	INTERGENIC
SBS	Chr1	18087082	C-T	HOMO	INTERGENIC
SBS	Chr1	18485249	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g33590
SBS	Chr1	39645830	C-T	HOMO	INTERGENIC
SBS	Chr1	5969967	C-G	HOMO	SYNONYMOUS_CODING
SBS	Chr10	20880511	T-C	HET	INTERGENIC
SBS	Chr11	13594143	G-A	HOMO	INTERGENIC
SBS	Chr11	21074471	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g35880
SBS	Chr11	8072193	G-A	HOMO	INTERGENIC
SBS	Chr12	1532199	C-T	HOMO	INTRON
SBS	Chr2	15077683	C-T	HOMO	INTERGENIC
SBS	Chr2	4702225	G-T	HET	INTERGENIC
SBS	Chr2	9590433	A-G	HET	INTERGENIC
SBS	Chr3	20995448	C-A	HOMO	INTERGENIC
SBS	Chr3	27419608	G-T	HET	INTERGENIC
SBS	Chr3	28216393	C-T	HET	INTERGENIC
SBS	Chr3	4818618	T-C	HOMO	INTRON
SBS	Chr3	4819636	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g09220
SBS	Chr3	6763361	G-A	HOMO	INTRON
SBS	Chr4	10934008	G-A	HET	INTRON
SBS	Chr4	16412181	C-T	HET	INTERGENIC
SBS	Chr4	2163939	G-T	HET	INTERGENIC
SBS	Chr4	2211002	G-A	HOMO	INTERGENIC
SBS	Chr4	22843086	C-A	HET	INTERGENIC
SBS	Chr4	2894290	A-C	HET	INTERGENIC
SBS	Chr5	19187046	A-G	HET	INTERGENIC
SBS	Chr6	13617497	C-T	HOMO	INTERGENIC
SBS	Chr6	21157378	C-A	HOMO	INTERGENIC
SBS	Chr6	4587335	T-A	HOMO	INTERGENIC
SBS	Chr6	6327598	T-C	HOMO	INTERGENIC
SBS	Chr6	9047596	A-G	HOMO	INTERGENIC
SBS	Chr7	14509175	T-C	HET	INTRON
SBS	Chr7	9342439	C-T	HOMO	INTERGENIC
SBS	Chr8	23856392	A-T	HET	INTERGENIC
SBS	Chr8	6031419	C-G	HET	INTERGENIC
SBS	Chr8	9422088	C-G	HET	INTERGENIC
SBS	Chr9	10913480	T-C	HOMO	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	7006384	7006387	3	LOC_Os06g12820
Deletion	Chr4	12406442	12406446	4	LOC_Os04g21910
Deletion	Chr11	12550344	12550349	5	LOC_Os11g21850
Deletion	Chr2	12740683	12740687	4
Deletion	Chr6	13395663	13395669	6
Deletion	Chr11	13652685	13652687	2
Deletion	Chr11	14992218	14992222	4
Deletion	Chr5	15036001	15045000	9000	2
Deletion	Chr5	16366390	16366396	6
Deletion	Chr1	16698057	16698059	2
Deletion	Chr3	17902263	17902264	1
Deletion	Chr11	24801724	24801728	4
Deletion	Chr7	25877718	25877723	5
Deletion	Chr7	25886149	25886150	1
Deletion	Chr7	26376959	26376965	6	LOC_Os07g44130
Deletion	Chr7	27464635	27464642	7
Deletion	Chr6	28977821	28977827	6	LOC_Os06g47900
Deletion	Chr1	29344198	29344200	2
Deletion	Chr2	33524094	33524103	9

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	8582698	8582718	21
Insertion	Chr11	19595026	19595027	2
Insertion	Chr6	1309350	1309351	2
Insertion	Chr7	8045906	8045909	4

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	15036139	15254072	LOC_Os05g25830
Inversion	Chr5	15045162	15254107
Inversion	Chr5	28241560	28302174

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	8523391	Chr6	21524123
Translocation	Chr10	17654154	Chr4	4446210	LOC_Os10g33500
Translocation	Chr2	33982013	Chr1	24997041	LOC_Os01g43630
Translocation	Chr2	33982016	Chr1	24958803	LOC_Os01g43580

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